CF417612
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECO8A (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O8 (strain IAI1) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EN G +NIGNP E ++ EL E ++ P ++VE++ D RKP I A L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECO5E (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EN G +NIGNP E ++ EL E ++ P ++VE++ D RKP I A L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHHCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECO57 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O157:H7 GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EN G +NIGNP E ++ EL E ++ P ++VE++ D RKP I A L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHHCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECO55 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain 55989 / EAEC) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EN G +NIGNP E ++ EL E ++ P ++VE++ D RKP I A L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECO24 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EN G +NIGNP E ++ EL E ++ P ++VE++ D RKP I A L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_AERS4 (Bifunctional polymyxin resistance protein arnA OS=Aeromonas salmonicida (strain A449) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 46/181 (25.41%), Postives = 84/181 (46.41%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP----VNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y ++ G+ + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++E + +NIG+P E ++L++AE + + P K VE+ D R+P I A+ LL WEP +++ + Sbjct: 462 RWIYSVSKQLLDRVIWAYGKKEGLNFTLFRPFNWMGPRLDSLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQKRCFTDIEDGIEALFRIIENKGNRCDGQIINIGSPDNEASILQMAEVLLGKFEAHPLRHHFPPFAGFKRVESKSFYGDGYQDVSHRRPSIKNARRLLDWEPTIEMEE 642
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_PHOLL (Bifunctional polymyxin resistance protein arnA OS=Photorhabdus luminescens subsp. laumondii GN=arnA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11 Identity = 50/187 (26.74%), Postives = 87/187 (46.52%), Query Frame = 1 Query: 13 VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE----NTGPVNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLR 492 V PI R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R F ++D ++ L R++E + +NIGNP E ++ +LAE + ++ P K VE+ D RKP I A+ LL W+P + ++ Sbjct: 453 VGPINKQRWIYSVSKQLLDRVIWAYGEKEGLKFTLFRPFNWMGPRLDNLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDINDGIEALFRIIENREGLCDGQIINIGNPTNEASIRQLAEILLDSFEDHELRDHFPPFAGFKKVESGSYYGKGYQDVEHRKPSIKNAERLLDWKPTIDMK 639
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_SALTI (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhi GN=arnA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11 Identity = 49/181 (27.07%), Postives = 84/181 (46.41%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM--EGENTGP--VNIGNP-GEFTMLELAETVKELIN---------PEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EG+ +NIGNP E ++ ELA + + + P ++VE+ D RKP I A+ L WEP + +RD Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRD 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_SALPK (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A (strain AKU_12601) GN=arnA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11 Identity = 49/181 (27.07%), Postives = 84/181 (46.41%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM--EGENTGP--VNIGNP-GEFTMLELAETVKELIN---------PEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EG+ +NIGNP E ++ ELA + + + P ++VE+ D RKP I A+ L WEP + +RD Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRD 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_SALPA (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A GN=arnA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11 Identity = 49/181 (27.07%), Postives = 84/181 (46.41%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM--EGENTGP--VNIGNP-GEFTMLELAETVKELIN---------PEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EG+ +NIGNP E ++ ELA + + + P ++VE+ D RKP I A+ L WEP + +RD Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRD 640 The following BLAST results are available for this feature:
BLAST of CF417612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417612 ID=CF417612; Name=CF417612; organism=Citrus sinensis; type=EST; length=654bpback to top |