CF417612

Overview
NameCF417612
Unique NameCF417612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7508 contig Csv1_Contig7508:900..1553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECO8A (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O8 (strain IAI1) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EN G       +NIGNP  E ++ EL E          ++    P    ++VE++        D   RKP I  A   L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECO5E (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EN G       +NIGNP  E ++ EL E          ++    P    ++VE++        D   RKP I  A   L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHHCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECO57 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O157:H7 GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EN G       +NIGNP  E ++ EL E          ++    P    ++VE++        D   RKP I  A   L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHHCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECO55 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain 55989 / EAEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EN G       +NIGNP  E ++ EL E          ++    P    ++VE++        D   RKP I  A   L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECO24 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EN G       +NIGNP  E ++ EL E          ++    P    ++VE++        D   RKP I  A   L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_AERS4 (Bifunctional polymyxin resistance protein arnA OS=Aeromonas salmonicida (strain A449) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 46/181 (25.41%), Postives = 84/181 (46.41%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP----VNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y ++ G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++E +        +NIG+P  E ++L++AE +         +    P    K VE+         D   R+P I  A+ LL WEP +++ +
Sbjct:  462 RWIYSVSKQLLDRVIWAYGKKEGLNFTLFRPFNWMGPRLDSLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQKRCFTDIEDGIEALFRIIENKGNRCDGQIINIGSPDNEASILQMAEVLLGKFEAHPLRHHFPPFAGFKRVESKSFYGDGYQDVSHRRPSIKNARRLLDWEPTIEMEE 642          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_PHOLL (Bifunctional polymyxin resistance protein arnA OS=Photorhabdus luminescens subsp. laumondii GN=arnA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11
Identity = 50/187 (26.74%), Postives = 87/187 (46.52%), Query Frame = 1
Query:   13 VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE----NTGPVNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLR 492
            V PI   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  ++D ++ L R++E      +   +NIGNP  E ++ +LAE +         ++   P    K VE+         D   RKP I  A+ LL W+P + ++
Sbjct:  453 VGPINKQRWIYSVSKQLLDRVIWAYGEKEGLKFTLFRPFNWMGPRLDNLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDINDGIEALFRIIENREGLCDGQIINIGNPTNEASIRQLAEILLDSFEDHELRDHFPPFAGFKKVESGSYYGKGYQDVEHRKPSIKNAERLLDWKPTIDMK 639          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_SALTI (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhi GN=arnA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 49/181 (27.07%), Postives = 84/181 (46.41%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM--EGENTGP--VNIGNP-GEFTMLELAETVKELIN---------PEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EG+      +NIGNP  E ++ ELA  + +  +         P    ++VE+         D   RKP I  A+  L WEP + +RD
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRD 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_SALPK (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A (strain AKU_12601) GN=arnA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 49/181 (27.07%), Postives = 84/181 (46.41%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM--EGENTGP--VNIGNP-GEFTMLELAETVKELIN---------PEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EG+      +NIGNP  E ++ ELA  + +  +         P    ++VE+         D   RKP I  A+  L WEP + +RD
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRD 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_SALPA (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A GN=arnA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 49/181 (27.07%), Postives = 84/181 (46.41%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM--EGENTGP--VNIGNP-GEFTMLELAETVKELIN---------PEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EG+      +NIGNP  E ++ ELA  + +  +         P    ++VE+         D   RKP I  A+  L WEP + +RD
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRD 640          
The following BLAST results are available for this feature:
BLAST of CF417612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ARNA_ECO8A3.363e-1127.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO5E3.363e-1127.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO573.363e-1127.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO553.363e-1127.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO243.363e-1127.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERS43.363e-1125.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PHOLL4.392e-1126.74Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALTI5.737e-1127.07Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPK5.737e-1127.07Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPA5.737e-1127.07Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-542 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417612 ID=CF417612; Name=CF417612; organism=Citrus sinensis; type=EST; length=654bp
TATTGGGGTAATGTCAATCCAATTGGGGTTCGTAGCTGCTATGATGAGGG
AAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGACAGCATGGGA
TACAAATCCGCATTGCTAGAATCTTTAACACTTATGGACCACGCATGAAT
ATTGATGATGGGCGTGTGGTCAGCAATTTCATTGCTCAGGCACTACGAGG
TGAACCTTTGACTGTCCAAAAGCCTGGAACACAAACTCGCAGTTTCTGTT
ATGTCTCTGATATGGTGGATGGCCTTATTCGCCTCATGGAAGGAGAGAAC
ACTGGCCCAGTCAACATTGGAAACCCAGGTGAATTTACAATGCTTGAGCT
TGCTGAGACAGTGAAGGAGCTTATCAATCCTGAGATTGAGATAAAGATGG
TTGAGAACACTCCTGATGATCCACGACAAAGAAAACCTGACATCTCAAAA
GCAAAGGAATTGCTTGGATGGGAGCCAAAAGTCAAGTTGCGGGATGGACT
TCCTCTTATGGAAGAGGATTTCCGATCAAGGCTTGGAGTTCCCAAAAGGA
ATTAATAAAAACAGCAAGAATTATATCGATACAGGGTGAACACTTGAGTC
TTGGATTCTTTCCACCTAATGTGGGAGTGCTTTAGAATTAGAAACACAAG
TCCT
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