CF417612

Overview
NameCF417612
Unique NameCF417612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_SHIB3 (Putative bifunctional polymyxin resistance protein arnA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=arnA PE=5 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 49/183 (26.78%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EN G       +NIGNP  E ++ EL +          ++    P    ++VE++        D   RKP I  A   L WEPK+ +++
Sbjct:  326 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGKMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 506          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 53/188 (28.19%), Postives = 86/188 (45.74%), Query Frame = 1
Query:   13 VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE----NTGPVNIGNP-GEFTMLELAETVKELIN---------PEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            V PI   R  Y   K++ + +++ Y  Q G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  V+D ++ L R++E      N   +NIGNP  E ++ +L E +              P    + VE+         D   RKP I  A++L+GW P ++L +
Sbjct:  456 VGPINKQRWIYSVSKQLLDRVIWAYG-QKGLQFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVADGIEALARIIENRDGCCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGNFPPFAGFREVESQSFYGKGYQDVSHRKPSIDNARQLIGWTPGIELSE 642          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ERWT9 (Bifunctional polymyxin resistance protein arnA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=arnA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 50/186 (26.88%), Postives = 85/186 (45.70%), Query Frame = 1
Query:   13 VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP----VNIGNP-GEFTMLELAETVKELIN---------PEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKL 489
            V PI   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L  ++E +        +NIGNP  E ++ +LAE + E            P    + VE++        D   RKP I  AK+LL W+P + +
Sbjct:  453 VGPINKQRWIYSVSKQLLDRVIWAYGDKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGRQKRCFTDIHDGIEALFLIIENKQKNCDGQIINIGNPENEASIKQLAEQLLESFERHPLRDRFPPFAGFREVESSTYYGKGYQDVEHRKPSIRNAKQLLNWQPTIAM 638          
The following BLAST results are available for this feature:
BLAST of CF417612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ARNA_SHIB39.785e-1126.78Putative bifunctional polymyxin resistance protein... [more]
ARNA_PSE149.785e-1128.19Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWT99.785e-1126.88Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-542 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417612 ID=CF417612; Name=CF417612; organism=Citrus sinensis; type=EST; length=654bp
TATTGGGGTAATGTCAATCCAATTGGGGTTCGTAGCTGCTATGATGAGGG
AAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGACAGCATGGGA
TACAAATCCGCATTGCTAGAATCTTTAACACTTATGGACCACGCATGAAT
ATTGATGATGGGCGTGTGGTCAGCAATTTCATTGCTCAGGCACTACGAGG
TGAACCTTTGACTGTCCAAAAGCCTGGAACACAAACTCGCAGTTTCTGTT
ATGTCTCTGATATGGTGGATGGCCTTATTCGCCTCATGGAAGGAGAGAAC
ACTGGCCCAGTCAACATTGGAAACCCAGGTGAATTTACAATGCTTGAGCT
TGCTGAGACAGTGAAGGAGCTTATCAATCCTGAGATTGAGATAAAGATGG
TTGAGAACACTCCTGATGATCCACGACAAAGAAAACCTGACATCTCAAAA
GCAAAGGAATTGCTTGGATGGGAGCCAAAAGTCAAGTTGCGGGATGGACT
TCCTCTTATGGAAGAGGATTTCCGATCAAGGCTTGGAGTTCCCAAAAGGA
ATTAATAAAAACAGCAAGAATTATATCGATACAGGGTGAACACTTGAGTC
TTGGATTCTTTCCACCTAATGTGGGAGTGCTTTAGAATTAGAAACACAAG
TCCT
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