CF417612
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_SHIB3 (Putative bifunctional polymyxin resistance protein arnA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=arnA PE=5 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11 Identity = 49/183 (26.78%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EN G +NIGNP E ++ EL + ++ P ++VE++ D RKP I A L WEPK+ +++ Sbjct: 326 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGKMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 506
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11 Identity = 53/188 (28.19%), Postives = 86/188 (45.74%), Query Frame = 1 Query: 13 VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE----NTGPVNIGNP-GEFTMLELAETVKELIN---------PEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 V PI R Y K++ + +++ Y Q G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F V+D ++ L R++E N +NIGNP E ++ +L E + P + VE+ D RKP I A++L+GW P ++L + Sbjct: 456 VGPINKQRWIYSVSKQLLDRVIWAYG-QKGLQFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVADGIEALARIIENRDGCCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGNFPPFAGFREVESQSFYGKGYQDVSHRKPSIDNARQLIGWTPGIELSE 642
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ERWT9 (Bifunctional polymyxin resistance protein arnA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=arnA PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11 Identity = 50/186 (26.88%), Postives = 85/186 (45.70%), Query Frame = 1 Query: 13 VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP----VNIGNP-GEFTMLELAETVKELIN---------PEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKL 489 V PI R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L ++E + +NIGNP E ++ +LAE + E P + VE++ D RKP I AK+LL W+P + + Sbjct: 453 VGPINKQRWIYSVSKQLLDRVIWAYGDKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGRQKRCFTDIHDGIEALFLIIENKQKNCDGQIINIGNPENEASIKQLAEQLLESFERHPLRDRFPPFAGFREVESSTYYGKGYQDVEHRKPSIRNAKQLLNWQPTIAM 638 The following BLAST results are available for this feature:
BLAST of CF417612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417612 ID=CF417612; Name=CF417612; organism=Citrus sinensis; type=EST; length=654bpback to top |