CF417624

Overview
NameCF417624
Unique NameCF417624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_SYNJB (50S ribosomal protein L31 OS=Synechococcus sp. GN=rpmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.110e-14
Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEKFRQKFG 323
            KK +HPQ+Y +AKV CNGE+VMT G T+ E  VDVWSGNH F+ G  S  ++D++ +VEKF +K+G
Sbjct:    3 KKGLHPQWYPEAKVICNGEVVMTVGSTKPELKVDVWSGNHPFFTG--SQKIIDSEGRVEKFMRKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_PROM4 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9211) GN=rpmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.110e-14
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K+DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KEDIHPTWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_SYNS9 (50S ribosomal protein L31 OS=Synechococcus sp. (strain CC9902) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.450e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSDIHPTWYPDAKVICNGEVVMTTGATQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_SYNJA (50S ribosomal protein L31 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.450e-14
Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEKFRQKFG 323
            KK IHPQ+Y +AKV CNGE+VMT G T+ E  VDVWSGNH F+ G  S  ++D++ +V+KF +K+G
Sbjct:    3 KKGIHPQWYPEAKVICNGEVVMTVGSTKPELKVDVWSGNHPFFTG--SQKIIDSEGRVDKFMRKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_PROMM (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.450e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPNWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_PROM3 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9303) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.450e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPNWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_SYNSC (50S ribosomal protein L31 OS=Synechococcus sp. (strain CC9605) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.894e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPTWYPDAKVICNGEVVMTTGATQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_SYNS3 (50S ribosomal protein L31 OS=Synechococcus sp. (strain CC9311) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.894e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPTWYPDAKVICNGEVVMTTGSTQPEINVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_SYNPX (50S ribosomal protein L31 OS=Synechococcus sp. (strain WH8102) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.894e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPTWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_CYAP8 (50S ribosomal protein L31 OS=Cyanothece sp. (strain PCC 8801) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.894e-14
Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGLSEIMEIPVLKGE 365
            K DIHP +Y +AK+ CNGE+VMT G TQ E  V+VWSGNH FY G +  +  +  ++++F++++G L +    P  KG+
Sbjct:    3 KADIHPTWYPEAKIICNGEVVMTVGSTQPEIHVEVWSGNHPFYTGTQKMIDTEG-RIDRFQKRYGNLGKGGSKPNKKGD 80          
The following BLAST results are available for this feature:
BLAST of CF417624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL31_SYNJB1.110e-1456.0650S ribosomal protein L31 OS=Synechococcus sp. GN=... [more]
RL31_PROM41.110e-1455.3850S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNS91.450e-1455.3850S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_SYNJA1.450e-1456.0650S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_PROMM1.450e-1455.3850S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM31.450e-1455.3850S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNSC1.894e-1455.3850S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_SYNS31.894e-1455.3850S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_SYNPX1.894e-1455.3850S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_CYAP81.894e-1444.3050S ribosomal protein L31 OS=Cyanothece sp. (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-554 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417624 ID=CF417624; Name=CF417624; organism=Citrus sinensis; type=EST; length=514bp
AAATGGCGCAGACTTTACCCAACACATTCTTCCAAATCAAACCCTCTGCT
CCAATTCTCCCCACCAGAAAGGTGAAGAACTGTGCAGCAACGGGCAGTGG
TTACAGGACCCGGGCGGTGACGTGTCGAAAGAAGGACATACACCCTCAAT
TCTACGAGGATGCAAAAGTGTACTGTAACGGTGAGCTCGTAATGACGACG
GGTGGGACCCAGAAGGAGTACGTGGTGGATGTCTGGTCGGGAAACCATGC
GTTTTACCTCGGCGGCCGCTCTGCTGTTGTCGTCGACGCCGACCAAGTCG
AGAAGTTCCGTCAGAAGTTCGGAGGATTGTCTGAGATTATGGAAATTCCC
GTGCTTAAAGGAGAGATTGTGTTGCCGCCTAAGCGCAAGTCCGCGGCCGC
TAAAGGTGGCAAGAAGAAGTANAAATTTGGTACGGCGTTGTTTTGAGGTA
ATTGGGGAATGTTTGTGAGTGGATGGATTTTATTTGATCGAATGATGTGT
TGATATTTGAACGA
back to top