CF417624

Overview
NameCF417624
Unique NameCF417624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_PROMS (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain AS9601) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.473e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_PROM9 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpmE PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.473e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_PROM2 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.473e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_PROM0 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9301) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.473e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_TRIEI (50S ribosomal protein L31 OS=Trichodesmium erythraeum (strain IMS101) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKF 320
            K DIHP++Y +AKVYCNGE+VMT G TQ E  VDVWSGNH ++ G +  +  +  +VE+F +K+
Sbjct:    3 KADIHPEWYPEAKVYCNGEVVMTVGSTQPEIHVDVWSGNHPYFTGTQKIIDTEG-RVERFMRKY 65          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_PROMT (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain NATL2A) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K DIHP +Y +AKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSDIHPTWYPEAKVICNGEVVMTTGATQPEIQVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_SYNPW (50S ribosomal protein L31 OS=Synechococcus sp. (strain WH7803) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.510e-14
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K +IHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPEIHPTWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_PROMP (50S ribosomal protein L31 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpmE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.196e-14
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K +IHP++Y DAKV CNGE+VMTTG T+ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTKPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_PROM5 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpmE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.196e-14
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K +IHP++Y DAKV CNGE+VMTTG T+ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTKPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_SYNR3 (50S ribosomal protein L31 OS=Synechococcus sp. (strain RCC307) GN=rpmE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.398e-14
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K DIHP +Y DAKV CNGE+VMTTG T  E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPTWYPDAKVICNGEVVMTTGSTTPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
The following BLAST results are available for this feature:
BLAST of CF417624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL31_PROMS2.473e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM92.473e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM22.473e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM02.473e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_TRIEI3.230e-1453.1350S ribosomal protein L31 OS=Trichodesmium erythra... [more]
RL31_PROMT3.230e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNPW5.510e-1453.8550S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_PROMP7.196e-1452.3150S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM57.196e-1452.3150S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNR39.398e-1453.8550S ribosomal protein L31 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-554 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417624 ID=CF417624; Name=CF417624; organism=Citrus sinensis; type=EST; length=514bp
AAATGGCGCAGACTTTACCCAACACATTCTTCCAAATCAAACCCTCTGCT
CCAATTCTCCCCACCAGAAAGGTGAAGAACTGTGCAGCAACGGGCAGTGG
TTACAGGACCCGGGCGGTGACGTGTCGAAAGAAGGACATACACCCTCAAT
TCTACGAGGATGCAAAAGTGTACTGTAACGGTGAGCTCGTAATGACGACG
GGTGGGACCCAGAAGGAGTACGTGGTGGATGTCTGGTCGGGAAACCATGC
GTTTTACCTCGGCGGCCGCTCTGCTGTTGTCGTCGACGCCGACCAAGTCG
AGAAGTTCCGTCAGAAGTTCGGAGGATTGTCTGAGATTATGGAAATTCCC
GTGCTTAAAGGAGAGATTGTGTTGCCGCCTAAGCGCAAGTCCGCGGCCGC
TAAAGGTGGCAAGAAGAAGTANAAATTTGGTACGGCGTTGTTTTGAGGTA
ATTGGGGAATGTTTGTGAGTGGATGGATTTTATTTGATCGAATGATGTGT
TGATATTTGAACGA
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