CF417624

Overview
NameCF417624
Unique NameCF417624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_MICAN (50S ribosomal protein L31 OS=Microcystis aeruginosa (strain NIES-843) GN=rpmE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.157e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 3 
Query:  132 KDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKF 320
            K IHP +Y +AKV CNGELVMT G T+ E  V+VWSGNH FY G +  +  +  +V++F +K+
Sbjct:    3 KKIHPTWYPEAKVICNGELVMTVGSTKPEIHVEVWSGNHPFYTGTQKMIDTEG-RVDRFLRKY 64
The following BLAST results are available for this feature:
BLAST of CF417624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL31_MICAN5.157e-1250.7950S ribosomal protein L31 OS=Microcystis aeruginos... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-554 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417624 ID=CF417624; Name=CF417624; organism=Citrus sinensis; type=EST; length=514bp
AAATGGCGCAGACTTTACCCAACACATTCTTCCAAATCAAACCCTCTGCT
CCAATTCTCCCCACCAGAAAGGTGAAGAACTGTGCAGCAACGGGCAGTGG
TTACAGGACCCGGGCGGTGACGTGTCGAAAGAAGGACATACACCCTCAAT
TCTACGAGGATGCAAAAGTGTACTGTAACGGTGAGCTCGTAATGACGACG
GGTGGGACCCAGAAGGAGTACGTGGTGGATGTCTGGTCGGGAAACCATGC
GTTTTACCTCGGCGGCCGCTCTGCTGTTGTCGTCGACGCCGACCAAGTCG
AGAAGTTCCGTCAGAAGTTCGGAGGATTGTCTGAGATTATGGAAATTCCC
GTGCTTAAAGGAGAGATTGTGTTGCCGCCTAAGCGCAAGTCCGCGGCCGC
TAAAGGTGGCAAGAAGAAGTANAAATTTGGTACGGCGTTGTTTTGAGGTA
ATTGGGGAATGTTTGTGAGTGGATGGATTTTATTTGATCGAATGATGTGT
TGATATTTGAACGA
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