CF417625

Overview
NameCF417625
Unique NameCF417625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9884 contig Csv1_Contig9884:49..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 6.732e-81
Identity = 119/154 (77.27%), Postives = 131/154 (85.06%), Query Frame = 2
Query:   83 APSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDG 529
            AP  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVL G
Sbjct:   16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMG 167          

HSP 2 Score: 79.337 bits (194), Expect = 6.732e-81
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 3
Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVK+
Sbjct:  166 MGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKE 211          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 6.732e-81
Identity = 119/154 (77.27%), Postives = 131/154 (85.06%), Query Frame = 2
Query:   83 APSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDG 529
            AP  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVL G
Sbjct:   16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMG 167          

HSP 2 Score: 79.337 bits (194), Expect = 6.732e-81
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 3
Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVK+
Sbjct:  166 MGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKE 211          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.147e-80
Identity = 113/140 (80.71%), Postives = 124/140 (88.57%), Query Frame = 2
Query:  110 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDG 529
            GGR++MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVL G
Sbjct:    4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMG 141          

HSP 2 Score: 82.4185 bits (202), Expect = 1.147e-80
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 3
Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVK+
Sbjct:  140 MGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 185          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 2.541e-80
Identity = 113/140 (80.71%), Postives = 123/140 (87.86%), Query Frame = 2
Query:  110 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDG 529
            GGR +MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVL G
Sbjct:   32 GGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMG 169          

HSP 2 Score: 82.4185 bits (202), Expect = 2.541e-80
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 3
Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVK+
Sbjct:  168 MGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 213          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 9.595e-80
Identity = 120/155 (77.42%), Postives = 128/155 (82.58%), Query Frame = 2
Query:   80 LAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDG 529
            L P  NEL     +   RI+MR+T   +  S   WYGPDR KYLGP S   PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY GNP+LIHAQSILAIWACQVVL G
Sbjct:   18 LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMG 170          

HSP 2 Score: 77.0258 bits (188), Expect = 9.595e-80
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 3
Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MG +EGYR+ GG LGE  DPL PGG+FDPLGLADDPEA AELKVK+
Sbjct:  169 MGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKE 214          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.034e-79
Identity = 149/207 (71.98%), Postives = 164/207 (79.23%), Query Frame = 2
Query:   59 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGSR*GLQNCWRAAR*SD*PIVPRWQL*SIGFG**PGGFC*AQG*EIKNG 673
            F GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+  G +           P+ P      +G    P  F   +  EIKNG
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG 219          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.351e-79
Identity = 149/207 (71.98%), Postives = 164/207 (79.23%), Query Frame = 2
Query:   59 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGSR*GLQNCWRAAR*SD*PIVPRWQL*SIGFG**PGGFC*AQG*EIKNG 673
            F GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+  G +           P+ P      +G    P  F   +  EIKNG
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG 218          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.764e-79
Identity = 148/207 (71.50%), Postives = 164/207 (79.23%), Query Frame = 2
Query:   59 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGSR*GLQNCWRAAR*SD*PIVPRWQL*SIGFG**PGGFC*AQG*EIKNG 673
            F GKAV L+PS +E++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+  G +           P+ P      +G    P  F   +  EIKNG
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG 218          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.009e-79
Identity = 148/207 (71.50%), Postives = 163/207 (78.74%), Query Frame = 2
Query:   59 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGSR*GLQNCWRAAR*SD*PIVPRWQL*SIGFG**PGGFC*AQG*EIKNG 673
            F GKAV L+PS +E++  GR++MRKT +K+   SSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+  G +           P+ P      +G    P  F   +  EIKNG
Sbjct:   13 FAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG 219          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.132e-79
Identity = 146/205 (71.22%), Postives = 161/205 (78.54%), Query Frame = 2
Query:   59 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGSR*GLQNCWRAAR*SD*PIVPRWQL*SIGFG**PGGFC*AQG*EIKNG 673
            F G+AV L+PS  E++  GR+SMRKT +K V+S SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+L G+  G +           P+ P      +G    P  F   +  EIKNG
Sbjct:   13 FAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG 217          
The following BLAST results are available for this feature:
BLAST of CF417625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB23_ORYSJ6.732e-8177.27Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI6.732e-8177.27Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_SOLLC1.147e-8080.71Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB26_PETSP2.541e-8080.71Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_PINTH9.595e-8077.42Chlorophyll a-b binding protein type I, chloroplas... [more]
CB24_TOBAC1.034e-7971.98Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC1.351e-7971.98Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB25_NICPL1.764e-7971.50Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB2G_SOLLC3.009e-7971.50Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB22_TOBAC5.132e-7971.22Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-555 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417625 ID=CF417625; Name=CF417625; organism=Citrus sinensis; type=EST; length=675bp
TTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGGCTCTCT
CCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAG
CTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGT
TTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCC
CACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGCGAC
TACGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAA
GAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTC
TTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGT
GAGGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCGGGCT
TGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCA
TCTGGGCTTGCCAGGTGGTCTTGGATGGGAGCCGTTGAGGGTTACAGAAT
TGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCA
GCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTC
AAGGTTAAGAAATCAAGAATGGAAG
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