CF417625
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 2.504e-22 Identity = 37/47 (78.72%), Postives = 39/47 (82.98%), Query Frame = 3 Query: 525 MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662 MGAVEGYR+AG GPLGE D LYPGGSFDPL DPEAFAELKVK+ Sbjct: 26 MGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKE 72 HSP 2 Score: 51.6026 bits (122), Expect = 2.504e-22 Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 2 Query: 449 LDYLGNPSLIHAQSILAIWACQVVLDGS 532 LDYLGNPSL+HAQSILAIWA QV+L G+ Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGA 28
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18 Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 3 Query: 525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662 MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+ Sbjct: 170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18 Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 3 Query: 525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662 MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+ Sbjct: 170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18 Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 3 Query: 525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662 MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+ Sbjct: 19 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 64
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18 Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 3 Query: 525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662 MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+ Sbjct: 168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18 Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 3 Query: 525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662 MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+ Sbjct: 168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.849e-18 Identity = 49/138 (35.51%), Postives = 64/138 (46.38%), Query Frame = 2 Query: 62 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 469 VG LAPS +G T S V+ + W+ G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L G W KA +G YLGNP Sbjct: 13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWF-----------PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132 HSP 2 Score: 40.4318 bits (93), Expect = 1.849e-18 Identity = 16/25 (64.00%), Postives = 20/25 (80.00%), Query Frame = 3 Query: 588 YPGGSFDPLGLADDPEAFAELKVKK 662 YPGG+FDPLG + DP F ELK+K+ Sbjct: 167 YPGGAFDPLGFSKDPAKFEELKLKE 191
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.511e-17 Identity = 39/91 (42.86%), Postives = 48/91 (52.75%), Query Frame = 2 Query: 203 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 469 + G+P PSYL G PGD+G+D+ GL P + +E E+IHCRWAML G + PE L G W KA GG YLG P Sbjct: 50 MPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP 133 HSP 2 Score: 41.2022 bits (95), Expect = 1.511e-17 Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 3 Query: 588 YPGGSFDPLGLADDPEAFAELKVKK 662 YPGG+FDPLG + DP F ELKVK+ Sbjct: 168 YPGGAFDPLGYSKDPAKFEELKVKE 192
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15 Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 2 Query: 215 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 508 PP +L G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q + + +L + +L WA Sbjct: 74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWA 164
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.918e-15 Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 2 Query: 137 GSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 508 GS+SV+ + PDR + PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV W+ AG Q + + +L + +L WA Sbjct: 50 GSRSVAVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWA 164 The following BLAST results are available for this feature:
BLAST of CF417625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417625 ID=CF417625; Name=CF417625; organism=Citrus sinensis; type=EST; length=675bpback to top |