CF417625

Overview
NameCF417625
Unique NameCF417625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.504e-22
Identity = 37/47 (78.72%), Postives = 39/47 (82.98%), Query Frame = 3
Query:  525 MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAELKVK+
Sbjct:   26 MGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKE 72          

HSP 2 Score: 51.6026 bits (122), Expect = 2.504e-22
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 2
Query:  449 LDYLGNPSLIHAQSILAIWACQVVLDGS 532
            LDYLGNPSL+HAQSILAIWA QV+L G+
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGA 28          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 3
Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 3
Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 3
Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:   19 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 64          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 3
Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 3
Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.849e-18
Identity = 49/138 (35.51%), Postives = 64/138 (46.38%), Query Frame = 2
Query:   62 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 469
            VG    LAPS     +G       T S  V+  + W+            G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWF-----------PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132          

HSP 2 Score: 40.4318 bits (93), Expect = 1.849e-18
Identity = 16/25 (64.00%), Postives = 20/25 (80.00%), Query Frame = 3
Query:  588 YPGGSFDPLGLADDPEAFAELKVKK 662
            YPGG+FDPLG + DP  F ELK+K+
Sbjct:  167 YPGGAFDPLGFSKDPAKFEELKLKE 191          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.511e-17
Identity = 39/91 (42.86%), Postives = 48/91 (52.75%), Query Frame = 2
Query:  203 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 469
            + G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P
Sbjct:   50 MPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP 133          

HSP 2 Score: 41.2022 bits (95), Expect = 1.511e-17
Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 3
Query:  588 YPGGSFDPLGLADDPEAFAELKVKK 662
            YPGG+FDPLG + DP  F ELKVK+
Sbjct:  168 YPGGAFDPLGYSKDPAKFEELKVKE 192          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 2
Query:  215 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 508
            PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA
Sbjct:   74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWA 164          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.918e-15
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 2
Query:  137 GSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 508
            GS+SV+  +    PDR  +       PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA
Sbjct:   50 GSRSVAVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWA 164          
The following BLAST results are available for this feature:
BLAST of CF417625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB21_RAPSA2.504e-2278.72Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2F_SOLLC1.330e-1893.48Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.330e-1893.48Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC1.330e-1893.48Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.330e-1893.48Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.330e-1893.48Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB121_HORVU1.849e-1835.51Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.511e-1742.86Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC3.065e-1539.80Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY8.918e-1536.29Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-555 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417625 ID=CF417625; Name=CF417625; organism=Citrus sinensis; type=EST; length=675bp
TTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGGCTCTCT
CCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAG
CTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGT
TTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCC
CACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGCGAC
TACGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAA
GAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTC
TTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGT
GAGGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCGGGCT
TGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCA
TCTGGGCTTGCCAGGTGGTCTTGGATGGGAGCCGTTGAGGGTTACAGAAT
TGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCA
GCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTC
AAGGTTAAGAAATCAAGAATGGAAG
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