CF417625
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13 Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2 Query: 206 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 433 + EPP+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL G+ WF+AG + Sbjct: 193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261 HSP 2 Score: 72.0182 bits (175), Expect = 3.172e-12 Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 2 Query: 215 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 418 PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL G WF+ Sbjct: 380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440 HSP 3 Score: 63.929 bits (154), Expect = 2.643e-11 Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 2 Query: 218 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 421 PS+L GE+ GD G+D AGL+ADP+TF + R EV H R AML +G + P+ L G+ +W++A Sbjct: 12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEA 72 HSP 4 Score: 25.0238 bits (53), Expect = 2.643e-11 Identity = 17/39 (43.59%), Postives = 23/39 (58.97%), Query Frame = 3 Query: 543 YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELK 653 + +A G + E +DP +YPG FDPL L D AE+K Sbjct: 93 FEVARG-VKENSDPTTIYPG--FDPLNLTTDYTKEAEIK 128
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.500e-13 Identity = 34/49 (69.39%), Postives = 36/49 (73.47%), Query Frame = 3 Query: 525 MGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662 MGAVEGYR A G GE D LYPGG FDPLGLADDP+ F ELKVK+ Sbjct: 22 MGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKE 70 HSP 2 Score: 27.335 bits (59), Expect = 9.500e-13 Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 2 Query: 470 SLIHAQSILAIWACQVVLDGS 532 +LIHA+S+LAI A QV+L G+ Sbjct: 4 ALIHAKSLLAILATQVLLMGA 24
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 9.509e-12 Identity = 44/116 (37.93%), Postives = 60/116 (51.72%), Query Frame = 2 Query: 110 GGRISMRKTGSKSV---SSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAG 424 G RIS T S ++ +P + L S + SYL G PGD+G+D GLS DPE F + + L EVI+ R+AMLGA G + PE+L + G+ E WF+ G Sbjct: 24 GSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTG 138 HSP 2 Score: 35.8094 bits (81), Expect = 9.509e-12 Identity = 20/56 (35.71%), Postives = 30/56 (53.57%), Query Frame = 3 Query: 498 PSGLARWSWMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKK 662 P + + ++G +G LG DP YPGG F+PLG D ++ ELK+K+ Sbjct: 177 PGSMGKQYFLGLEKG-------LGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKE 225
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 1.602e-11 Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 2 Query: 221 SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAG 424 SYL G PGDYG+D GLS DPE F + R L EVI+ R+AMLGA+G + PE L + G+ E WF+ G Sbjct: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTG 140 HSP 2 Score: 33.8834 bits (76), Expect = 1.602e-11 Identity = 18/56 (32.14%), Postives = 31/56 (55.36%), Query Frame = 3 Query: 498 PSGLARWSWMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKK 662 P + + ++G +G+ +G +P YPGG F +PLG D ++ ELK+K+ Sbjct: 179 PGSMGKQYFLGLEKGFGGSG-------NPAYPGGPFFNPLGFGKDEKSLKELKLKE 227 The following BLAST results are available for this feature:
BLAST of CF417625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417625 ID=CF417625; Name=CF417625; organism=Citrus sinensis; type=EST; length=675bpback to top |