CF417625

Overview
NameCF417625
Unique NameCF417625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  206 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 433
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          

HSP 2 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 2
Query:  215 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 418
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF+
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440          

HSP 3 Score: 63.929 bits (154), Expect = 2.643e-11
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 2
Query:  218 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 421
            PS+L GE+ GD G+D AGL+ADP+TF + R  EV H R AML  +G + P+ L       G+ +W++A
Sbjct:   12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEA 72          

HSP 4 Score: 25.0238 bits (53), Expect = 2.643e-11
Identity = 17/39 (43.59%), Postives = 23/39 (58.97%), Query Frame = 3
Query:  543 YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELK 653
            + +A G + E +DP  +YPG  FDPL L  D    AE+K
Sbjct:   93 FEVARG-VKENSDPTTIYPG--FDPLNLTTDYTKEAEIK 128          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.500e-13
Identity = 34/49 (69.39%), Postives = 36/49 (73.47%), Query Frame = 3
Query:  525 MGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKVK+
Sbjct:   22 MGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKE 70          

HSP 2 Score: 27.335 bits (59), Expect = 9.500e-13
Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  470 SLIHAQSILAIWACQVVLDGS 532
            +LIHA+S+LAI A QV+L G+
Sbjct:    4 ALIHAKSLLAILATQVLLMGA 24          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 9.509e-12
Identity = 44/116 (37.93%), Postives = 60/116 (51.72%), Query Frame = 2
Query:  110 GGRISMRKTGSKSV---SSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAG 424
            G RIS   T   S    ++ +P       + L   S +  SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PE+L + G+   E    WF+ G
Sbjct:   24 GSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTG 138          

HSP 2 Score: 35.8094 bits (81), Expect = 9.509e-12
Identity = 20/56 (35.71%), Postives = 30/56 (53.57%), Query Frame = 3
Query:  498 PSGLARWSWMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKK 662
            P  + +  ++G  +G       LG   DP YPGG  F+PLG   D ++  ELK+K+
Sbjct:  177 PGSMGKQYFLGLEKG-------LGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKE 225          
BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.602e-11
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 2
Query:  221 SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAG 424
            SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L + G+   E    WF+ G
Sbjct:   66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTG 140          

HSP 2 Score: 33.8834 bits (76), Expect = 1.602e-11
Identity = 18/56 (32.14%), Postives = 31/56 (55.36%), Query Frame = 3
Query:  498 PSGLARWSWMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKK 662
            P  + +  ++G  +G+  +G       +P YPGG F +PLG   D ++  ELK+K+
Sbjct:  179 PGSMGKQYFLGLEKGFGGSG-------NPAYPGGPFFNPLGFGKDEKSLKELKLKE 227          
The following BLAST results are available for this feature:
BLAST of CF417625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
LH18_EUGGR6.391e-1346.05Light-harvesting complex I LH38 proteins (Fragment... [more]
CB21_EUGGR9.500e-1369.39Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB13_SOLLC9.509e-1237.93Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.602e-1148.68Chlorophyll a-b binding protein 3, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-555 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417625 ID=CF417625; Name=CF417625; organism=Citrus sinensis; type=EST; length=675bp
TTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGGCTCTCT
CCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAG
CTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGT
TTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCC
CACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGCGAC
TACGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAA
GAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTC
TTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGT
GAGGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCGGGCT
TGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCA
TCTGGGCTTGCCAGGTGGTCTTGGATGGGAGCCGTTGAGGGTTACAGAAT
TGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCA
GCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTC
AAGGTTAAGAAATCAAGAATGGAAG
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