CF417627

Overview
NameCF417627
Unique NameCF417627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417627 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1
Query:  139 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 333
            YPGG+FDPLG + DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:  168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
BLAST of CF417627 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.402e-16
Identity = 51/108 (47.22%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    7 YLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 327
            YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DPE  A+L++ EIK+ RLAM +  GF VQA  TGKGPL N A HL+DP++
Sbjct:  179 YLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280          
BLAST of CF417627 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.090e-16
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    7 YLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 327
            YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DP   A+L++ EIK+ RLAM    GF VQA  TGKGPL N A HL+DP++
Sbjct:  176 YLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277          
BLAST of CF417627 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.203e-13
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1
Query:  112 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 330
            P GEV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HL+DP +N
Sbjct:  179 PKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244          
BLAST of CF417627 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.096e-12
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 1
Query:  112 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 330
            P GEV    YPGG F+PL  A   EA    K KEI NGRLAM +  GF +Q  VTGKGP +NL  H++DP +N
Sbjct:  178 PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243          
BLAST of CF417627 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.737e-12
Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   52 IWACQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 321
            ++  ++VL+G  EG R A    P    TDP+            YPGG  FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:  153 LFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CF417627 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.575e-12
Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   52 IWACQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 321
            ++  ++VL+G  EG R A    P    TDP+            YPGG  FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:  153 LFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CF417627 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.964e-12
Identity = 44/102 (43.14%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    7 YLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 303
            YLG P      +++ I   +V+++G +E  R          DP   +YPGG FDPLGLA DPE    LK+ EIK+ RLAM +   F +QA  TGKGP+  LA
Sbjct:  180 YLGQPLPFSLTTLIWI---EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272          
BLAST of CF417627 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.040e-11
Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   52 IWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 330
            IW  +V+L+G  E YR         T+P    YPGG FDPL LA +D E    LK  EIK+ RLAM S FG+ VQA+ TG+G L +LA   AD +NN
Sbjct:  188 IWI-EVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA-KFADGLNN 276          
The following BLAST results are available for this feature:
BLAST of CF417627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB11_SOLLC9.712e-1866.67Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB4A_ARATH1.402e-1647.22Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH9.090e-1646.30Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB24_ARATH7.203e-1356.16Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA2.096e-1253.42Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB12_PETHY2.737e-1244.34Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC3.575e-1244.34Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB4C_ARATH7.964e-1243.14Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE1.040e-1148.45Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-557 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417627 ID=CF417627; Name=CF417627; organism=Citrus sinensis; type=EST; length=491bp
CTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGC
CATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAA
TTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGC
AGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCT
CAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTG
GTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTG
GCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCAC
CAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTT
TCGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTA
ATTTGAGTTGTGATTATTTATAAAATGCTTCAATTTGATCT
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