CF417629

Overview
NameCF417629
Unique NameCF417629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: KKCC2_MOUSE (Calcium/calmodulin-dependent protein kinase kinase 2 OS=Mus musculus GN=Camkk2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 39/129 (30.23%), Postives = 66/129 (51.16%), Query Frame = 3
Query:    6 SRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKN----LPRELTEPAQAIYYRKENPTFSLQSVEEITKIV 380
            +R+ + GK  DVW+ GVTLY  + G  PF D+          S+I +   + PD   I++D ++L++R+   NP  RI + EIK HPW  ++    LP E  E    +   +E    S++ +  +  ++
Sbjct:  362 TRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER----IMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVTRHGAEPLPSE-DENCTLVEVTEEEVENSVKHIPSLATVI 485          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: KKCC2_HUMAN (Calcium/calmodulin-dependent protein kinase kinase 2 OS=Homo sapiens GN=CAMKK2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 39/129 (30.23%), Postives = 66/129 (51.16%), Query Frame = 3
Query:    6 SRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKN----LPRELTEPAQAIYYRKENPTFSLQSVEEITKIV 380
            +R+ + GK  DVW+ GVTLY  + G  PF D+          S+I +   + PD   I++D ++L++R+   NP  RI + EIK HPW  ++    LP E  E    +   +E    S++ +  +  ++
Sbjct:  362 TRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER----IMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVTRHGAEPLPSE-DENCTLVEVTEEEVENSVKHIPSLATVI 485          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: KC2D2_DANRE (Calcium/calmodulin-dependent protein kinase type II delta 2 chain OS=Danio rerio GN=camk2d2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 29/87 (33.33%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 RREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPW 269
            R++  GK  D+W+CGV LY++LVG  PF D++  + +++   +  A  +  P++  ++ + ++L++++   NPS+RIT  E   HPW
Sbjct:  186 RKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQI--KAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEAPKHPW 270          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: IPL1_CANGA (Spindle assembly checkpoint kinase OS=Candida glabrata GN=IPL1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 33/95 (34.74%), Postives = 59/95 (62.11%), Query Frame = 3
Query:    3 LSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKNLP 287
            ++ REYD ++ DVW+ GV  Y ++VG  PFE+      ++    RI+      P+   IS+D ++L+S++ V + ++R+++  +K+HPW LKN P
Sbjct:  269 ITPREYDEQV-DVWALGVLAYELVVGVPPFEENSKELTYK----RILKCDLNFPE--SISKDAKDLISKLLVTDTTQRLSLTGVKTHPWILKNKP 356          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: CIPK4_ARATH (CBL-interacting serine/threonine-protein kinase 4 OS=Arabidopsis thaliana GN=CIPK4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 36/106 (33.96%), Postives = 61/106 (57.55%), Query Frame = 3
Query:    3 LSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKNLPRELTEPAQAIY 320
            +++R YDG  AD WSCGV L+V+L G  PF+D      +RK   R     Y+ P +  IS+  R+++ ++   NP  R++I+ +    WF K+L  E++E   +++
Sbjct:  194 IAQRGYDGAKADAWSCGVFLFVLLAGYVPFDDANIVAMYRKIHKR----DYRFPSW--ISKPARSIIYKLLDPNPETRMSIEAVMGTVWFQKSL--EISEFQSSVF 291          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: KCC2A_RAT (Calcium/calmodulin-dependent protein kinase type II subunit alpha OS=Rattus norvegicus GN=Camk2a PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 29/87 (33.33%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 RREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPW 269
            R++  GK  D+W+CGV LY++LVG  PF D++  + +++   +  A  +  P++  ++ + ++L++++   NPS+RIT  E   HPW
Sbjct:  186 RKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQI--KAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPW 270          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: KCC2A_PONAB (Calcium/calmodulin-dependent protein kinase type II subunit alpha OS=Pongo abelii GN=CAMK2A PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 29/87 (33.33%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 RREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPW 269
            R++  GK  D+W+CGV LY++LVG  PF D++  + +++   +  A  +  P++  ++ + ++L++++   NPS+RIT  E   HPW
Sbjct:  186 RKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQI--KAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPW 270          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: KCC2A_MOUSE (Calcium/calmodulin-dependent protein kinase type II subunit alpha OS=Mus musculus GN=Camk2a PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 29/87 (33.33%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 RREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPW 269
            R++  GK  D+W+CGV LY++LVG  PF D++  + +++   +  A  +  P++  ++ + ++L++++   NPS+RIT  E   HPW
Sbjct:  186 RKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQI--KAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPW 270          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: KCC2A_HUMAN (Calcium/calmodulin-dependent protein kinase type II subunit alpha OS=Homo sapiens GN=CAMK2A PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 29/87 (33.33%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 RREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPW 269
            R++  GK  D+W+CGV LY++LVG  PF D++  + +++   +  A  +  P++  ++ + ++L++++   NPS+RIT  E   HPW
Sbjct:  186 RKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQI--KAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPW 270          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: KC2D1_DANRE (Calcium/calmodulin-dependent protein kinase type II delta 1 chain OS=Danio rerio GN=camk2d1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 29/87 (33.33%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 RREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPW 269
            R+E  GK  D+W+CGV LY++LVG  PF D++  + +++   +  A  +  P++  ++ + ++L++++   NP++RIT  E   HPW
Sbjct:  186 RKEPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQI--KAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITAAEALKHPW 270          
The following BLAST results are available for this feature:
BLAST of CF417629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
KKCC2_MOUSE4.498e-1130.23Calcium/calmodulin-dependent protein kinase kinase... [more]
KKCC2_HUMAN4.498e-1130.23Calcium/calmodulin-dependent protein kinase kinase... [more]
KC2D2_DANRE4.498e-1133.33Calcium/calmodulin-dependent protein kinase type I... [more]
IPL1_CANGA4.498e-1134.74Spindle assembly checkpoint kinase OS=Candida glab... [more]
CIPK4_ARATH4.498e-1133.96CBL-interacting serine/threonine-protein kinase 4 ... [more]
KCC2A_RAT5.874e-1133.33Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2A_PONAB5.874e-1133.33Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2A_MOUSE5.874e-1133.33Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2A_HUMAN5.874e-1133.33Calcium/calmodulin-dependent protein kinase type I... [more]
KC2D1_DANRE5.874e-1133.33Calcium/calmodulin-dependent protein kinase type I... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-559 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417629 ID=CF417629; Name=CF417629; organism=Citrus sinensis; type=EST; length=668bp
TTCTTTCTCGGAGAGAATATGATGGCAAGTTGGCGGATGTATGGTCTTGT
GGAGTTACTCTTTATGTTATGCTAGTGGGAGCTTACCCGTTTGAAGACCA
GGAGGACCCGAAGAATTTCAGGAAGACCATTAGTAGAATTATGGCTGTTC
AATACAAGATCCCAGACTATGTTCACATATCTCAAGACTGTAGAAATCTT
CTTTCTCGCATTTTTGTTGCCAATCCGTCAAGGAGAATCACCATTAAAGA
AATCAAGAGCCATCCATGGTTTCTAAAGAACTTGCCCAGGGAACTCACAG
AGCCAGCTCAAGCCATCTACTATAGGAAAGAAAACCCAACCTTTTCCCTC
CAAAGTGTTGAAGAGATCACAAAAATTGTGGAAGAGGCCAAAGTTCCTCC
TCCTGTGTCTCGATCAATCGGAGGCTTTGGCTGGGGAGGAGAAGAAGATG
GTGACGAGAAGGAAGAGGAAACTGATGCAGACGAAGAAGACGAGTATGAG
AAGACGGTCAAGGAGGCTCAGCAAAGTGGAGAAGTTAGCGTCAGTTAAGA
ATTAATTTATCCCTCTTCCAAATATTTGAGTCAAGGATTTTGCCCCTGGG
ATTACCTGTACTTAAGCATGCTTTCTAGTTTCATGTTTGTATAGAGTCAG
TTTTCGATTTAGGACCTG
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