CF417629

Overview
NameCF417629
Unique NameCF417629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11860 contig Csv1_Contig11860:96..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: SRK2F_ARATH (Serine/threonine-protein kinase SRK2F OS=Arabidopsis thaliana GN=SRK2F PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.872e-41
Identity = 82/133 (61.65%), Postives = 101/133 (75.94%), Query Frame = 3
Query:    3 LSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKN---LPRELTEPAQAIYYRKENPTFSLQSVEEITKIVEEAK 392
            LSR+EY+GK+ADVWSCGVTLYVMLVGAYPFED EDP+N R TI RI++V Y IPDYV IS +C++LLSRIFVA+P +RIT+ EI+ HPWFLK    +P E  +    +   +E      QSVEEI KI+EEA+
Sbjct:  171 LSRKEYNGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNIRNTIQRILSVHYTIPDYVRISSECKHLLSRIFVADPDKRITVPEIEKHPWFLKGPLVVPPEEEKCDNGVEEEEEEEEKCRQSVEEIVKIIEEAR 303          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: SRK2I_ARATH (Serine/threonine-protein kinase SRK2I OS=Arabidopsis thaliana GN=SRK2I PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.989e-39
Identity = 78/139 (56.12%), Postives = 106/139 (76.26%), Query Frame = 3
Query:    3 LSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKNLPRELTEPAQAIYYRKENPTFSLQSVEEITKIVEEAKVPPPVSRSI 419
            L R+EYDGK+ADVWSCGVTLYVMLVGAYPFED E+P+++RKTI RI++V+Y IPD + IS +C +L+SRIFVA+P+ RI+I EIK+H WFLKNLP +L   +      +E P   +QS++ I +I+ EA +P   +R +
Sbjct:  189 LLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATRISIPEIKTHSWFLKNLPADLMNESNTGSQFQE-PEQPMQSLDTIMQIISEATIPAVRNRCL 326          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: SRK2D_ARATH (Serine/threonine-protein kinase SRK2D OS=Arabidopsis thaliana GN=SRK2D PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.697e-39
Identity = 77/139 (55.40%), Postives = 106/139 (76.26%), Query Frame = 3
Query:    3 LSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKNLPRELTEPAQAIYYRKENPTFSLQSVEEITKIVEEAKVPPPVSRSI 419
            L R+EYDGKLADVWSCGVTLYVMLVGAYPFED ++P+++RKTI RI++V Y IP+ +H+S +CR+L+SRIFVA+P+ RITI EI S  WFLKNLP +L +    +  + + P   +QS++ I +I+ EA +P   +R +
Sbjct:  190 LLRQEYDGKLADVWSCGVTLYVMLVGAYPFEDPQEPRDYRKTIQRILSVTYSIPEDLHLSPECRHLISRIFVADPATRITIPEITSDKWFLKNLPGDLMD-ENRMGSQFQEPEQPMQSLDTIMQIISEATIPTVRNRCL 327          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: Y7165_DICDI (Probable serine/threonine-protein kinase DDB_G0277165 OS=Dictyostelium discoideum GN=DDB_G0277165 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.997e-19
Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 3
Query:   15 EYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKN 281
            +YDG+ ADVWSCGV LY +L G  PF+D+    N R+ ++++    + +P Y+H  +D ++LL+++   +PS+RI+IKEIK HPWF+ N
Sbjct:  183 DYDGQKADVWSCGVILYALLTGKLPFDDE----NIRRLLNKVKNGAFSMPPYIH--KDAQDLLTKMLTVDPSKRISIKEIKEHPWFVSN 265          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: KIN10_ARATH (SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-17
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 3
Query:    3 LSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKNLPRELTEP 305
            +S + Y G   DVWSCGV LY +L G  PF+D+  P  F+K    I    Y +P   H+S   R+L+ R+ V +P +R+TI EI+ HPWF  +LPR L  P
Sbjct:  211 ISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGI----YTLPS--HLSPGARDLIPRMLVVDPMKRVTIPEIRQHPWFQAHLPRYLAVP 305          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: AMPKA_DICDI (5'-AMP-activated serine/threonine-protein kinase catalytic subunit alpha OS=Dictyostelium discoideum GN=snfA PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.357e-17
Identity = 50/139 (35.97%), Postives = 74/139 (53.24%), Query Frame = 3
Query:    3 LSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKNLPRELTEPAQAIYYRKENPTFSLQSVEEITKIV--EEAKVPPPVSR 413
            +S + Y G   DVWSCGV LY  L    PF+D+  P  F+K    +    + IPD+V  S  C +L+ ++ V +P +RITI EI++HPWF   LP+ L+ P           TF  +S++ I   +  E  +V  P+ R
Sbjct:  201 ISGKLYAGPEVDVWSCGVILYAFLCAKLPFDDESIPMLFKKIREGV----FSIPDFV--SPSCADLIKKMLVVDPVKRITIHEIRNHPWFQVKLPKYLSSP----------HTFLSKSIQTINNSILNEMVQVYAPIDR 323          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: SNF1_SCHPO (SNF1-like protein kinase ssp2 OS=Schizosaccharomyces pombe GN=ssp2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 3
Query:   18 YDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKNLP 287
            Y G   DVWSCG+ LYVMLVG  PF+D+  P  F+K  S +    Y +PD+  +S   ++L+ R+ VA+P +RITI+EI+  PWF  NLP
Sbjct:  207 YAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCV----YVMPDF--LSPGAQSLIRRMIVADPMQRITIQEIRRDPWFNVNLP 290          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: RKIN1_SECCE (Carbon catabolite-derepressing protein kinase OS=Secale cereale GN=RKIN1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 3
Query:    3 LSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKNLPRELTEP 305
            +S + Y G   DVWSCGV LY +L GA PF+D   P  F+K    I    Y +P  +++S   R+L+SR+ + +P +RITI EI+ H WF   LPR L  P
Sbjct:  186 ISGKLYAGPEIDVWSCGVILYALLCGAVPFDDDNIPNLFKK----IKGGTYILP--IYLSDLVRDLISRMLIVDPMKRITIGEIRKHSWFQNRLPRYLAVP 280          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: KIN11_ARATH (SNF1-related protein kinase catalytic subunit alpha KIN11 OS=Arabidopsis thaliana GN=KIN11 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    3 LSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKNLPREL 296
            +S + Y G   DVWSCGV LY +L G  PF+D+  P  F+K    I    Y +P   H+S + R+L+ R+ + +P +RITI EI+ H WF  +LPR L
Sbjct:  189 ISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGI----YTLPS--HLSSEARDLIPRMLIVDPVKRITIPEIRQHRWFQTHLPRYL 280          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: CIPKG_ORYSJ (CBL-interacting protein kinase 16 OS=Oryza sativa subsp. japonica GN=CIPK16 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 3
Query:    3 LSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKN-LPRELTEP 305
            L +R YDG  AD+WSCGV LYV+L G  PF+ +    N+ K   +I   +Y++P +V  S D R L+ R+ V +P++RI+I EI   PWF K  +P   T P
Sbjct:  194 LRKRGYDGARADLWSCGVVLYVLLCGFLPFQHE----NYAKMYQKIFKAEYQVPPWV--SGDARRLIVRLLVVDPAKRISIPEIMRTPWFKKGFVPPVPTSP 289          
The following BLAST results are available for this feature:
BLAST of CF417629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
SRK2F_ARATH1.872e-4161.65Serine/threonine-protein kinase SRK2F OS=Arabidops... [more]
SRK2I_ARATH2.989e-3956.12Serine/threonine-protein kinase SRK2I OS=Arabidops... [more]
SRK2D_ARATH8.697e-3955.40Serine/threonine-protein kinase SRK2D OS=Arabidops... [more]
Y7165_DICDI9.997e-1944.94Probable serine/threonine-protein kinase DDB_G0277... [more]
KIN10_ARATH3.216e-1743.56SNF1-related protein kinase catalytic subunit alph... [more]
AMPKA_DICDI9.357e-1735.975'-AMP-activated serine/threonine-protein kinase c... [more]
SNF1_SCHPO4.644e-1647.78SNF1-like protein kinase ssp2 OS=Schizosaccharomyc... [more]
RKIN1_SECCE4.644e-1643.56Carbon catabolite-derepressing protein kinase OS=S... [more]
KIN11_ARATH6.065e-1642.86SNF1-related protein kinase catalytic subunit alph... [more]
CIPKG_ORYSJ7.921e-1643.14CBL-interacting protein kinase 16 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-559 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417629 ID=CF417629; Name=CF417629; organism=Citrus sinensis; type=EST; length=668bp
TTCTTTCTCGGAGAGAATATGATGGCAAGTTGGCGGATGTATGGTCTTGT
GGAGTTACTCTTTATGTTATGCTAGTGGGAGCTTACCCGTTTGAAGACCA
GGAGGACCCGAAGAATTTCAGGAAGACCATTAGTAGAATTATGGCTGTTC
AATACAAGATCCCAGACTATGTTCACATATCTCAAGACTGTAGAAATCTT
CTTTCTCGCATTTTTGTTGCCAATCCGTCAAGGAGAATCACCATTAAAGA
AATCAAGAGCCATCCATGGTTTCTAAAGAACTTGCCCAGGGAACTCACAG
AGCCAGCTCAAGCCATCTACTATAGGAAAGAAAACCCAACCTTTTCCCTC
CAAAGTGTTGAAGAGATCACAAAAATTGTGGAAGAGGCCAAAGTTCCTCC
TCCTGTGTCTCGATCAATCGGAGGCTTTGGCTGGGGAGGAGAAGAAGATG
GTGACGAGAAGGAAGAGGAAACTGATGCAGACGAAGAAGACGAGTATGAG
AAGACGGTCAAGGAGGCTCAGCAAAGTGGAGAAGTTAGCGTCAGTTAAGA
ATTAATTTATCCCTCTTCCAAATATTTGAGTCAAGGATTTTGCCCCTGGG
ATTACCTGTACTTAAGCATGCTTTCTAGTTTCATGTTTGTATAGAGTCAG
TTTTCGATTTAGGACCTG
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