CF417629

Overview
NameCF417629
Unique NameCF417629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11860 contig Csv1_Contig11860:96..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: CIPKO_ARATH (CBL-interacting serine/threonine-protein kinase 24 OS=Arabidopsis thaliana GN=CIPK24 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 3
Query:    3 LSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKN 281
            LS + YDG  AD+WSCGV L+V+L G  PF + + P  +RK    I A ++  P +   S + + L+ RI   NP  RI I+ IK  PWF  N
Sbjct:  181 LSGQGYDGSAADIWSCGVILFVILAGYLPFSETDLPGLYRK----INAAEFSCPPW--FSAEVKFLIHRILDPNPKTRIQIQGIKKDPWFRLN 267          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: MARK2_RAT (Serine/threonine-protein kinase MARK2 OS=Rattus norvegicus GN=Mark2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 3
Query:   12 REYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPW 269
            ++YDG   DVWS GV LY ++ G+ PF+ Q    N ++   R++  +Y+IP Y  +S DC NLL +  + NPS+R T+++I    W
Sbjct:  224 KKYDGPEVDVWSLGVILYTLVSGSLPFDGQ----NLKELRERVLRGKYRIPFY--MSTDCENLLKKFLILNPSKRGTLEQIMKDRW 303          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: MARK2_HUMAN (Serine/threonine-protein kinase MARK2 OS=Homo sapiens GN=MARK2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 3
Query:   12 REYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPW 269
            ++YDG   DVWS GV LY ++ G+ PF+ Q    N ++   R++  +Y+IP Y  +S DC NLL +  + NPS+R T+++I    W
Sbjct:  224 KKYDGPEVDVWSLGVILYTLVSGSLPFDGQ----NLKELRERVLRGKYRIPFY--MSTDCENLLKKFLILNPSKRGTLEQIMKDRW 303          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: KCC2B_RAT (Calcium/calmodulin-dependent protein kinase type II subunit beta OS=Rattus norvegicus GN=Camk2b PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 31/87 (35.63%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 RREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPW 269
            R+E  GK  D+W+CGV LY++LVG  PF D++  K +++   +  A  +  P++  ++ + +NL++++   NP++RIT  E   HPW
Sbjct:  187 RKEAYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQI--KAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITAHEALKHPW 271          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: KCC2B_MOUSE (Calcium/calmodulin-dependent protein kinase type II subunit beta OS=Mus musculus GN=Camk2b PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 31/87 (35.63%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 RREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPW 269
            R+E  GK  D+W+CGV LY++LVG  PF D++  K +++   +  A  +  P++  ++ + +NL++++   NP++RIT  E   HPW
Sbjct:  187 RKEAYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQI--KAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITAHEALKHPW 271          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: KCC2B_HUMAN (Calcium/calmodulin-dependent protein kinase type II subunit beta OS=Homo sapiens GN=CAMK2B PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 31/87 (35.63%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 RREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPW 269
            R+E  GK  D+W+CGV LY++LVG  PF D++  K +++   +  A  +  P++  ++ + +NL++++   NP++RIT  E   HPW
Sbjct:  187 RKEAYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQI--KAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITAHEALKHPW 271          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: CIPKB_ARATH (CBL-interacting serine/threonine-protein kinase 11 OS=Arabidopsis thaliana GN=CIPK11 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 35/92 (38.04%), Postives = 52/92 (56.52%), Query Frame = 3
Query:    3 LSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLK 278
            LS++ Y+G   DVWSCG+ L+V++ G  PF D     N      +I   +Y+ P +  +S D +  +SR+   NP  RITI EI   PWF++
Sbjct:  194 LSKKGYEGAKVDVWSCGIVLFVLVAGYLPFND----PNVMNMYKKIYKGEYRFPRW--MSPDLKRFVSRLLDINPETRITIDEILKDPWFVR 279          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: SNF1_YEAST (Carbon catabolite-derepressing protein kinase OS=Saccharomyces cerevisiae GN=SNF1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 40/111 (36.04%), Postives = 57/111 (51.35%), Query Frame = 3
Query:    3 LSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKNLPRELTEPAQAIYYRKEN 335
            +S + Y G   DVWSCGV LYVML    PF+D+  P  F+   + +    Y +P +  +S     L+ R+ + NP  RI+I EI    WF  +LP  L  P    +  +EN
Sbjct:  223 ISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGV----YTLPKF--LSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKVDLPEYLLPPDLKPHPEEEN 327          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: MARK3_RAT (MAP/microtubule affinity-regulating kinase 3 OS=Rattus norvegicus GN=Mark3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = 3
Query:   12 REYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWFLKNLPRELTEP 305
            ++YDG   DVWS GV LY ++ G+ PF+ Q    N ++   R++  +Y+IP Y  +S DC NLL R  V NP +R T+++I    W       E  +P
Sbjct:  227 KKYDGPEVDVWSLGVILYTLVSGSLPFDGQ----NLKELRERVLRGKYRIPFY--MSTDCENLLKRFLVLNPVKRGTLEQIMKDRWINAGHEEEELKP 318          
BLAST of CF417629 vs. ExPASy Swiss-Prot
Match: CIPKE_ARATH (CBL-interacting serine/threonine-protein kinase 14 OS=Arabidopsis thaliana GN=CIPK14 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 3
Query:    3 LSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRNLLSRIFVANPSRRITIKEIKSHPWF 272
            L+++ YDG   D+WSCG+ L+V+  G  PF D      +RK    I   +++IP +   S D R LL+R+   NP  RITI+EI   PWF
Sbjct:  193 LAKKGYDGAKIDIWSCGIILFVLNAGYLPFNDHNLMVMYRK----IYKGEFRIPKWT--SPDLRRLLTRLLDTNPQTRITIEEIIHDPWF 276          
The following BLAST results are available for this feature:
BLAST of CF417629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
CIPKO_ARATH3.115e-1241.94CBL-interacting serine/threonine-protein kinase 24... [more]
MARK2_RAT4.068e-1239.53Serine/threonine-protein kinase MARK2 OS=Rattus no... [more]
MARK2_HUMAN4.068e-1239.53Serine/threonine-protein kinase MARK2 OS=Homo sapi... [more]
KCC2B_RAT4.068e-1235.63Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2B_MOUSE4.068e-1235.63Calcium/calmodulin-dependent protein kinase type I... [more]
KCC2B_HUMAN4.068e-1235.63Calcium/calmodulin-dependent protein kinase type I... [more]
CIPKB_ARATH4.068e-1238.04CBL-interacting serine/threonine-protein kinase 11... [more]
SNF1_YEAST5.313e-1236.04Carbon catabolite-derepressing protein kinase OS=S... [more]
MARK3_RAT5.313e-1237.76MAP/microtubule affinity-regulating kinase 3 OS=Ra... [more]
CIPKE_ARATH5.313e-1241.11CBL-interacting serine/threonine-protein kinase 14... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-559 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417629 ID=CF417629; Name=CF417629; organism=Citrus sinensis; type=EST; length=668bp
TTCTTTCTCGGAGAGAATATGATGGCAAGTTGGCGGATGTATGGTCTTGT
GGAGTTACTCTTTATGTTATGCTAGTGGGAGCTTACCCGTTTGAAGACCA
GGAGGACCCGAAGAATTTCAGGAAGACCATTAGTAGAATTATGGCTGTTC
AATACAAGATCCCAGACTATGTTCACATATCTCAAGACTGTAGAAATCTT
CTTTCTCGCATTTTTGTTGCCAATCCGTCAAGGAGAATCACCATTAAAGA
AATCAAGAGCCATCCATGGTTTCTAAAGAACTTGCCCAGGGAACTCACAG
AGCCAGCTCAAGCCATCTACTATAGGAAAGAAAACCCAACCTTTTCCCTC
CAAAGTGTTGAAGAGATCACAAAAATTGTGGAAGAGGCCAAAGTTCCTCC
TCCTGTGTCTCGATCAATCGGAGGCTTTGGCTGGGGAGGAGAAGAAGATG
GTGACGAGAAGGAAGAGGAAACTGATGCAGACGAAGAAGACGAGTATGAG
AAGACGGTCAAGGAGGCTCAGCAAAGTGGAGAAGTTAGCGTCAGTTAAGA
ATTAATTTATCCCTCTTCCAAATATTTGAGTCAAGGATTTTGCCCCTGGG
ATTACCTGTACTTAAGCATGCTTTCTAGTTTCATGTTTGTATAGAGTCAG
TTTTCGATTTAGGACCTG
back to top