CF417634

Overview
NameCF417634
Unique NameCF417634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417634 vs. ExPASy Swiss-Prot
Match: DNAJ_THICR (Chaperone protein dnaJ OS=Thiomicrospira crunogena (strain XCL-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = 3
Query:   21 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEVLSDPQKRAMFDTYGMP--QGSPRSADDIFSEYFDFTIPHXXXXXXXXXXXXXNEAFGEDDVFHSFNRVFVVG--GPKKAPPIENRLPCTLEELYKGTTKKIKIYRK 485
            DYY+IL V   AS  ++KKAY K+A +++PD+ PD+ +EAE K     EAYEVLSD QKR  +D +G     GS          + DF                  + FG+      F   F  G  GP+    ++  L  +LE+   GTT  ++I  K
Sbjct:    5 DYYEILEVSATASEGEIKKAYRKLAMRYHPDRNPDD-EEAEDKFKEASEAYEVLSDAQKRQAYDQFGHAGVDGSAGQGGFGGGGFADF-----------------GDIFGD-----IFGGGFGGGHRGPQPGSDLQYELEVSLEDAVAGTTVDVRIPTK 140          
BLAST of CF417634 vs. ExPASy Swiss-Prot
Match: DNAJ_PEDPA (Chaperone protein dnaJ OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 3
Query:   21 DYYKILGVDRNASCDDLKKAYEKMAAKWNPD--KYPDNKKEAEAKLNRVCEAYEVLSDPQKRAMFDTYG 221
            DYY ILGV ++AS D++KKAY K++ K++PD  K PD    AE K   V EAYEVL D QKRA +D +G
Sbjct:    6 DYYDILGVSKDASDDEIKKAYRKLSKKYHPDINKAPD----AEQKFKDVNEAYEVLGDSQKRAQYDQFG 70          
BLAST of CF417634 vs. ExPASy Swiss-Prot
Match: DNAJ_METMA (Chaperone protein dnaJ OS=Methanosarcina mazei GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 53/158 (33.54%), Postives = 78/158 (49.37%), Query Frame = 3
Query:   21 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEVLSDPQKRAMFDTYGMPQ-GSPRSADDIFSEYFDFTIPHXXXXXXXXXXXXXNEAFGEDDVFHSF---NRVFVVGGPKKAPPIENRLPCTLEELYKGTTKKIKIYR 482
            DYY+ILG+ +++S +D+KK Y K+A +++PD+  + +  AE K   + EAY VLSD +KRA +D +G     +  SA+DIF    DF                     G  D+F  F    R     GP++   ++  L  T EE   G  K I I R
Sbjct:    6 DYYEILGLSKDSSVEDIKKTYRKLALQYHPDR--NKEPGAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIF-RGADFG--------------------GFGDIFEMFFGGGRRGGPMGPRRGSDLQYDLYVTFEEAAFGVRKDIDIPR 140          
BLAST of CF417634 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPCP (Chaperone protein dnaJ OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 3
Query:   21 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDK-YPDNKKEAEAKLNRVCEAYEVLSDPQKRAMFDTYG 221
            DYY++LGV + AS D++KKAY K+A K +PD+   D  K +E K     EAYE+LSD QKRA +D +G
Sbjct:    5 DYYEVLGVGKTASEDEIKKAYRKLAMKHHPDRNQGDGAKASEEKFKEAKEAYEMLSDAQKRAAYDQFG 72          
BLAST of CF417634 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSW (Chaperone protein dnaJ OS=Geobacillus sp. (strain WCH70) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 55/161 (34.16%), Postives = 79/161 (49.07%), Query Frame = 3
Query:   21 DYYKILGVDRNASCDDLKKAYEKMAAKWNPD--KYPDNKKEAEAKLNRVCEAYEVLSDPQKRAMFDTYGMPQGSPRSADDIF-SEYFDFTIPHXXXXXXXXXXXXXNEAFGEDDVFHSF---NRVFVVGGPKKAPPIENRLPCTLEELYKGTTKKIKIYRK 485
            DYY+ILGV +NA+ +++KKAY K++ K++PD  K PD    A  K   + EAYEVLSD QKRA +D +G     P      F S+ FDF                 +   G +D+F +F    R      P+    ++  +  T EE   G    I+I R+
Sbjct:    5 DYYEILGVSKNATKEEIKKAYRKLSKKYHPDINKEPD----AAEKFKEIKEAYEVLSDDQKRAHYDQFG--HADPNQGFGGFRSDDFDF--------------GGFSGFGGFEDIFSTFFGGGRRRDPNAPRAGADLQYTMTLTFEEAAFGKETDIEIPRE 145          
BLAST of CF417634 vs. ExPASy Swiss-Prot
Match: DNAJ_COXBN (Chaperone protein dnaJ OS=Coxiella burnetii (strain Dugway 5J108-111) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 33/67 (49.25%), Postives = 50/67 (74.63%), Query Frame = 3
Query:   21 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEVLSDPQKRAMFDTYG 221
            DYY++LGV+RNA+  ++KKA+ ++A K++PD+ P + K+AE K     EAYEVL D +KRA +D +G
Sbjct:    5 DYYEVLGVNRNATEAEVKKAFRRLAMKYHPDRNPGD-KDAEVKFKEAREAYEVLCDSRKRASYDQFG 70          
BLAST of CF417634 vs. ExPASy Swiss-Prot
Match: DNAJ_COXB2 (Chaperone protein dnaJ OS=Coxiella burnetii (strain CbuG_Q212) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 33/67 (49.25%), Postives = 50/67 (74.63%), Query Frame = 3
Query:   21 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEVLSDPQKRAMFDTYG 221
            DYY++LGV+RNA+  ++KKA+ ++A K++PD+ P + K+AE K     EAYEVL D +KRA +D +G
Sbjct:    5 DYYEVLGVNRNATEAEVKKAFRRLAMKYHPDRNPGD-KDAEVKFKEAREAYEVLCDSRKRASYDQFG 70          
BLAST of CF417634 vs. ExPASy Swiss-Prot
Match: DNAJ_COXB1 (Chaperone protein dnaJ OS=Coxiella burnetii (strain CbuK_Q154) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 33/67 (49.25%), Postives = 50/67 (74.63%), Query Frame = 3
Query:   21 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEVLSDPQKRAMFDTYG 221
            DYY++LGV+RNA+  ++KKA+ ++A K++PD+ P + K+AE K     EAYEVL D +KRA +D +G
Sbjct:    5 DYYEVLGVNRNATEAEVKKAFRRLAMKYHPDRNPGD-KDAEVKFKEAREAYEVLCDSRKRASYDQFG 70          
BLAST of CF417634 vs. ExPASy Swiss-Prot
Match: DNAJ1_CERAE (DnaJ homolog subfamily A member 1 OS=Cercopithecus aethiops GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 47/160 (29.38%), Postives = 75/160 (46.88%), Query Frame = 3
Query:   24 YYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEVLSDPQKRAMFDTYGMPQGSPRSADDIFSEYFDFTIPHXXXXXXXXXXXXXNEAFGEDDVFHSFNRVFVVGG----PKKAPPIENRLPCTLEELYKGTTKKIKIYRKIV 491
            YY +LGV  NA+ ++LKKAY K+A K++PDK P+  +    K  ++ +AYEVLSD +KR ++D  G        A   F    D                              F+  F  GG     ++   + ++L  TLE+LY G T+K+ + + ++
Sbjct:    7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE----KFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFGSPMDI-----------------------------FDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVI 133          
BLAST of CF417634 vs. ExPASy Swiss-Prot
Match: DNJA1_PONAB (DnaJ homolog subfamily A member 1 OS=Pongo abelii GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 46/156 (29.49%), Postives = 75/156 (48.08%), Query Frame = 3
Query:   24 YYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEVLSDPQKRAMFDTYGMPQGSPRSADDIFSEYFDFTIPHXXXXXXXXXXXXXNEAFGEDDVFHSFNRVFVVGGPKKAPPIENRLPCTLEELYKGTTKKIKIYRKIV 491
            YY +LGV  NA+ ++LKKAY K+A K++PDK P+  +    K  ++ +AYEVLSD +KR ++D  G        A   F    D                         D+F    R   +   ++   + ++L  TLE+LY G T+K+ + + ++
Sbjct:    7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE----KFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFGSPMDIF-----------------------DMFFGGGR---MQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVI 132          
The following BLAST results are available for this feature:
BLAST of CF417634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_THICR4.479e-1233.96Chaperone protein dnaJ OS=Thiomicrospira crunogena... [more]
DNAJ_PEDPA4.479e-1255.07Chaperone protein dnaJ OS=Pediococcus pentosaceus ... [more]
DNAJ_METMA4.479e-1233.54Chaperone protein dnaJ OS=Methanosarcina mazei GN=... [more]
DNAJ_LEPCP4.479e-1251.47Chaperone protein dnaJ OS=Leptothrix cholodnii (st... [more]
DNAJ_GEOSW4.479e-1234.16Chaperone protein dnaJ OS=Geobacillus sp. (strain ... [more]
DNAJ_COXBN4.479e-1249.25Chaperone protein dnaJ OS=Coxiella burnetii (strai... [more]
DNAJ_COXB24.479e-1249.25Chaperone protein dnaJ OS=Coxiella burnetii (strai... [more]
DNAJ_COXB14.479e-1249.25Chaperone protein dnaJ OS=Coxiella burnetii (strai... [more]
DNAJ1_CERAE4.479e-1229.38DnaJ homolog subfamily A member 1 OS=Cercopithecus... [more]
DNJA1_PONAB5.849e-1229.49DnaJ homolog subfamily A member 1 OS=Pongo abelii ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-564 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417634 ID=CF417634; Name=CF417634; organism=Citrus sinensis; type=EST; length=703bp
AAGAAGAGAAGATGGGAGCTGATTATTACAAGATACTGGGAGTTGATCGG
AATGCAAGTTGCGATGACCTGAAGAAGGCTTACGAAAAGATGGCCGCGAA
GTGGAATCCTGATAAATATCCTGATAACAAGAAAGAAGCTGAAGCTAAGT
TGAACCGAGTTTGTGAAGCTTATGAGGTTCTAAGTGATCCTCAGAAAAGA
GCAATGTTTGATACTTACGGTATGCCACAAGGCAGTCCCCGAAGTGCTGA
TGACATTTTTTCGGAATATTTTGATTTCACAATCCCCCATGGAGGTGGAG
GGAGGAGAGGGTCAAGTTCCAGTTTCTCAAATGAGGCATTTGGTGAGGAT
GATGTTTTTCATTCCTTTAATAGAGTATTTGTAGTGGGTGGACCTAAGAA
AGCACCTCCGATTGAGAATAGGCTGCCTTGTACCCTTGAGGAACTCTACA
AGGGGACTACTAAGAAGATAAAGATCTATAGGAAAATTGTTGACATCAAT
GGTAATACAATCAAGGTGGAAGAAATTCTAACTATTAATGTGAAGCCTGG
ATGGAAGAAGGGTACAAGGATCACCTTCGAAGAGAAGGGAAATGTGCAGC
AAAATGTTAAACCTGCAGACGTCGTCTTCATCGTCGACGAGAAGCCTCAC
AGTGTGTTTACTCGAGATGGGAATGATTTGATCGTCACAAGGACGATAAC
TCT
back to top