CF417636

Overview
NameCF417636
Unique NameCF417636
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:935..1611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417636 vs. ExPASy Swiss-Prot
Match: METK1_ORYSJ (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. japonica GN=SAM1 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.507e-78
Identity = 140/164 (85.37%), Postives = 148/164 (90.24%), Query Frame = 1
Query:    1 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 492
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAY+ RQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTG+IPDKEILKIVKE+FDFRPGM+ INLDLK+GGNGR+LKTAAYGHFGRDDPDFTWEVVKPLKWEKP A
Sbjct:  233 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVARQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396          
BLAST of CF417636 vs. ExPASy Swiss-Prot
Match: METK1_ORYSI (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. indica GN=SAM1 PE=2 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 1.507e-78
Identity = 140/164 (85.37%), Postives = 148/164 (90.24%), Query Frame = 1
Query:    1 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 492
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAY+ RQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTG+IPDKEILKIVKE+FDFRPGM+ INLDLK+GGNGR+LKTAAYGHFGRDDPDFTWEVVKPLKWEKP A
Sbjct:  233 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVARQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396          
BLAST of CF417636 vs. ExPASy Swiss-Prot
Match: METK2_BETVU (S-adenosylmethionine synthetase 2 OS=Beta vulgaris GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.968e-78
Identity = 143/161 (88.82%), Postives = 146/161 (90.68%), Query Frame = 1
Query:    1 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 483
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKSIVANGLARR IVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGMM+INLDLKRGGNGRF KTAAYGHFGRDDPDFTWEVVKPLKWEK
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRAIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMMSINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEVVKPLKWEK 390          
BLAST of CF417636 vs. ExPASy Swiss-Prot
Match: METK1_PETCR (S-adenosylmethionine synthetase 1 (Fragment) OS=Petroselinum crispum GN=SMS-1 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.570e-78
Identity = 141/161 (87.58%), Postives = 148/161 (91.93%), Query Frame = 1
Query:    1 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 483
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPD+EILKIVKE+FDFRPGM++INLDLKRGGNGRFLKTAAYGHFGR+DPDFTWEVVKPLKWEK
Sbjct:   73 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 233          
BLAST of CF417636 vs. ExPASy Swiss-Prot
Match: METK1_BRAJU (S-adenosylmethionine synthetase 1 OS=Brassica juncea GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.357e-78
Identity = 141/164 (85.98%), Postives = 147/164 (89.63%), Query Frame = 1
Query:    1 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 492
            FHLNPSGRFVIGGP GDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQ+AKS+VANG+ARR +VQVSYAIGVPEP SVFVD+YGTG IPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  230 FHLNPSGRFVIGGPDGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQSAKSVVANGMARRALVQVSYAIGVPEPFSVFVDTYGTGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393          
BLAST of CF417636 vs. ExPASy Swiss-Prot
Match: METK_GOSHI (S-adenosylmethionine synthetase OS=Gossypium hirsutum GN=SAMS PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 9.766e-78
Identity = 141/164 (85.98%), Postives = 146/164 (89.02%), Query Frame = 1
Query:    1 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 492
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKSIVANGLARRC+VQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGM+ INLDLKRGGN RFLKTAAYGHFGRDD DFTWEVVKPLKW+K  A
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCVVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRDDTDFTWEVVKPLKWDKVHA 393          
BLAST of CF417636 vs. ExPASy Swiss-Prot
Match: METK4_VITVI (S-adenosylmethionine synthetase 4 OS=Vitis vinifera GN=METK4 PE=3 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.666e-77
Identity = 143/163 (87.73%), Postives = 146/163 (89.57%), Query Frame = 1
Query:    1 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 489
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+Y TGKIPDKEILKIVKESFDFRPGM+ INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK EK Q
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYATGKIPDKEILKIVKESFDFRPGMIAINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKAEKAQ 392          
BLAST of CF417636 vs. ExPASy Swiss-Prot
Match: METK2_POPTR (S-adenosylmethionine synthetase 2 OS=Populus trichocarpa GN=METK2 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.666e-77
Identity = 142/163 (87.12%), Postives = 146/163 (89.57%), Query Frame = 1
Query:    1 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 489
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEIL IVKE FDFRPGM+ I+LDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK EKPQ
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILNIVKEKFDFRPGMIAISLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKSEKPQ 392          
BLAST of CF417636 vs. ExPASy Swiss-Prot
Match: METK5_POPTR (S-adenosylmethionine synthetase 5 OS=Populus trichocarpa GN=METK5 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.176e-77
Identity = 140/160 (87.50%), Postives = 146/160 (91.25%), Query Frame = 1
Query:    1 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 480
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEIL+IVKESFDFRPGM++INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKW+
Sbjct:  231 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILQIVKESFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of CF417636 vs. ExPASy Swiss-Prot
Match: METK3_POPTR (S-adenosylmethionine synthetase 3 OS=Populus trichocarpa GN=METK3 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.176e-77
Identity = 140/160 (87.50%), Postives = 146/160 (91.25%), Query Frame = 1
Query:    1 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 480
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEIL+IVKESFDFRPGM++INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKW+
Sbjct:  231 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILQIVKESFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
The following BLAST results are available for this feature:
BLAST of CF417636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_ORYSJ1.507e-7885.37S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK1_ORYSI1.507e-7885.37S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK2_BETVU1.968e-7888.82S-adenosylmethionine synthetase 2 OS=Beta vulgaris... [more]
METK1_PETCR2.570e-7887.58S-adenosylmethionine synthetase 1 (Fragment) OS=Pe... [more]
METK1_BRAJU3.357e-7885.98S-adenosylmethionine synthetase 1 OS=Brassica junc... [more]
METK_GOSHI9.766e-7885.98S-adenosylmethionine synthetase OS=Gossypium hirsu... [more]
METK4_VITVI1.666e-7787.73S-adenosylmethionine synthetase 4 OS=Vitis vinifer... [more]
METK2_POPTR1.666e-7787.12S-adenosylmethionine synthetase 2 OS=Populus trich... [more]
METK5_POPTR2.176e-7787.50S-adenosylmethionine synthetase 5 OS=Populus trich... [more]
METK3_POPTR2.176e-7787.50S-adenosylmethionine synthetase 3 OS=Populus trich... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-566 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417636 ID=CF417636; Name=CF417636; organism=Citrus sinensis; type=EST; length=677bp
TTCCACCTTAATCCATCAGGTCGTTTTGTCATTGGTGGGCCTCATGGTGA
TGCTGGTCTCACTGGACGTAAGATCATCATCGACACTTATGGTGGCTGGG
GAGCCCATGGTGGCGGTGCTTTCTCTGGAAAAGACCCTACTAAGGTGGAT
AGGAGTGGTGCATACATTGTTAGGCAGGCTGCTAAGAGCATTGTTGCAAA
CGGGCTTGCTCGCAGGTGCATTGTCCAAGTCTCCTATGCCATTGGTGTGC
CTGAGCCATTGTCTGTTTTTGTGGACTCATATGGAACCGGCAAGATTCCT
GACAAGGAGATCCTCAAAATTGTGAAGGAAAGCTTTGATTTCAGGCCAGG
AATGATGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCT
TGAAGACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACT
TGGGAAGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTG
AGTTGAAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTA
GTGGATGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGC
AAATCTCCTGTGTTCAGAACTCATACATGTTCCCCATTCAATTCCTTTCT
TTTTCTTCTTTCCCCACTTCTTTTTTG
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