CF417703

Overview
NameCF417703
Unique NameCF417703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417703 vs. ExPASy Swiss-Prot
Match: H2BWT_HUMAN (Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = 3
Query:  171 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 428
            +++  Y  +VLKQVH  + +S +A+ +M+S ++DI +++A E+ RLAR  K+ TIT+ E + AVRL+LPG++ K A SEGTKAV +
Sbjct:   79 DSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGRLARSTKRQTITAWETRMAVRLLLPGQMGKLAESEGTKAVLR 164          
BLAST of CF417703 vs. ExPASy Swiss-Prot
Match: H2BFM_HUMAN (Histone H2B type F-M OS=Homo sapiens GN=H2BFM PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.507e-16
Identity = 39/86 (45.35%), Postives = 63/86 (73.26%), Query Frame = 3
Query:  171 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 428
            +++  Y  +VLKQVH  + +S +A+ +M+S I+DI +++A E+ +LA Y K+ TITSR+IQ AVRL+LPG++ K A ++GT A  +
Sbjct:  161 DSFTPYFPRVLKQVHQGLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 246          
BLAST of CF417703 vs. ExPASy Swiss-Prot
Match: H2BV_BOVIN (Histone H2B subacrosomal variant OS=Bos taurus GN=SUBH2BV PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.311e-15
Identity = 40/91 (43.96%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  168 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 440
            +  Y +YI +VLK+V P  GISS+ + I+N+ IND+FE+++ E+  L  Y K+ T+T  +I+ AV L+LP +LAK+AV+ G +AV ++  S
Sbjct:   32 LRNYSLYINRVLKEVVPQKGISSRTIDIINTMINDMFERISTEACNLMYYRKRCTLTPEDIEKAVYLLLPEKLAKYAVAFGKEAVQRYVRS 122          
BLAST of CF417703 vs. ExPASy Swiss-Prot
Match: H2BV_MOUSE (Histone H2B subacrosomal variant OS=Mus musculus GN=Subh2bv PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.230e-14
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 3
Query:  177 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 440
            Y +YI +VLK+V P+ GISS ++ IMN  INDIFE++A E+ +     K+ T+T  +IQ AV L+LP +LA  AV+ G+KAV +F  S
Sbjct:   36 YSLYINRVLKEVVPNRGISSYSVDIMNILINDIFERIATEACQQMFLRKRCTLTPGDIQQAVHLLLPKKLATLAVTFGSKAVHRFIHS 123          
BLAST of CF417703 vs. ExPASy Swiss-Prot
Match: H2BV1_DICDI (Histone H2B.v1 OS=Dictyostelium discoideum GN=H2Bv1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.092e-13
Identity = 36/86 (41.86%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  183 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 440
            IYI K++KQ++P   I  K++ I+ S I D    +  E+  L + + K T+++R++QT+VRL   GE+++HAVSEG K VT F S+
Sbjct:   18 IYIKKLIKQINPACRIQVKSVQILTSLIRDTTISIMNEAFHLVQLSNKRTLSARDVQTSVRLCTVGEISRHAVSEGVKRVTNFNSA 103          
The following BLAST results are available for this feature:
BLAST of CF417703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2BWT_HUMAN3.451e-1646.51Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=... [more]
H2BFM_HUMAN4.507e-1645.35Histone H2B type F-M OS=Homo sapiens GN=H2BFM PE=2... [more]
H2BV_BOVIN1.311e-1543.96Histone H2B subacrosomal variant OS=Bos taurus GN=... [more]
H2BV_MOUSE3.230e-1448.86Histone H2B subacrosomal variant OS=Mus musculus G... [more]
H2BV1_DICDI6.092e-1341.86Histone H2B.v1 OS=Dictyostelium discoideum GN=H2Bv... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-633 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417703 ID=CF417703; Name=CF417703; organism=Citrus sinensis; type=EST; length=573bp
CGCAGTTTTTTCTGACGATGGCACCAAAGGCGGAGAAGAAGCCAGCGGAG
GAGAAGAAGACACCGGTGGCGGAGAAGGCGCCTGCCGAGAAGAAGCCGAA
GGCCGGGAAGAAGCTTCCGAAGGAAGCCGCAGCCGGTGACAAGAAGAAGA
AGCGCACGAAGAAGAGCATTGAGACGTACAAGATCTACATATTCAAAGTC
CTGAAGCAAGTCCATCCAGATATCGGAATCTCGAGCAAGGCTATGGGAAT
TATGAACAGTTTCATCAACGATATTTTCGAGAAGCTTGCTCAGGAATCTT
CCAGGCTGGCAAGGTACAACAAGAAGCCGACGATAACTTCTCGTGAAATC
CAGACCGCTGTGAGACTTGTGCTTCCTGGTGAGCTGGCTAAGCATGCCGT
TTCTGAGGGTACCAAGGCGGTTACCAAGTTCACCTCGTCTTAAATTAGGG
TTAGGTTTGACTATGTGCGATGAAATTGGGGTTAGTGATGTTTACTGTGT
CCTTTCTTGGAGTAATAATGTAAGTAGTTAGTATTGGTGAAATGGCATGG
TGCTGATAGAAATGACTTATTTT
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