CF417733

Overview
NameCF417733
Unique NameCF417733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length392
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417733 vs. ExPASy Swiss-Prot
Match: GLNA1_SOYBN (Glutamine synthetase cytosolic isozyme 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.439e-46
Identity = 86/99 (86.87%), Postives = 93/99 (93.94%), Query Frame = 2
Query:   95 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 391
            T+K+IAEYIWIGGSGMD+RSKARTLPGPVSDPS+LPKWNYDGSSTGQAPGEDSE I Y    F+DPFRRGNNILV+CDAYTPAGEPIPTNKRHAAAK+F
Sbjct:   16 TEKVIAEYIWIGGSGMDLRSKARTLPGPVSDPSELPKWNYDGSSTGQAPGEDSEAI-YTHKPFQDPFRRGNNILVICDAYTPAGEPIPTNKRHAAAKVF 113          
BLAST of CF417733 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.454e-46
Identity = 84/99 (84.85%), Postives = 93/99 (93.94%), Query Frame = 2
Query:   95 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 391
            TDKIIAEYIWIGG+G+D+RSK+RT+  PV  PS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CDAYTPAGEPIPTNKRH AA++F
Sbjct:   73 TDKIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPAGEPIPTNKRHRAAEVF 171          
BLAST of CF417733 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.454e-46
Identity = 83/99 (83.84%), Postives = 93/99 (93.94%), Query Frame = 2
Query:   95 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 391
            TDKIIAEYIW+GG+G+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILVMCD YTPAGEPIPTNKR+ AA++F
Sbjct:   72 TDKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVF 170          
BLAST of CF417733 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.468e-46
Identity = 81/99 (81.82%), Postives = 92/99 (92.93%), Query Frame = 2
Query:   95 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 391
            TDK+IAEYIW+GGSG+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNN+LV+CD YTP GEP+PTNKRH AA+IF
Sbjct:   67 TDKVIAEYIWVGGSGIDIRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNVLVICDTYTPQGEPLPTNKRHRAAQIF 165          
BLAST of CF417733 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 5.468e-46
Identity = 84/99 (84.85%), Postives = 93/99 (93.94%), Query Frame = 2
Query:   95 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 391
            TD IIAEYIWIGG+G+D+RSK+RT+  PVS PS++PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CDAYTPAGEPIPTNKRH AA+IF
Sbjct:   74 TDSIIAEYIWIGGTGIDVRSKSRTISKPVSHPSEVPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVVCDAYTPAGEPIPTNKRHRAAEIF 172          
BLAST of CF417733 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.218e-45
Identity = 84/99 (84.85%), Postives = 92/99 (92.93%), Query Frame = 2
Query:   95 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 391
            TD+IIAEYIWIGGSG+D+RSK+RTL  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFR GNNILV+CD YTPAGEPIPTNKR  AA+IF
Sbjct:   72 TDRIIAEYIWIGGSGIDLRSKSRTLEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTYTPAGEPIPTNKRARAAEIF 170          
BLAST of CF417733 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.078e-45
Identity = 84/99 (84.85%), Postives = 89/99 (89.90%), Query Frame = 2
Query:   95 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 391
            TDK+IAEYIWIGGSG D+RSKARTL GPV+ PSKLPKWNYDGSSTGQAPGEDSEVI   +  FKDPFRRGNNILV+CD YTPAGEPIPTNKRH AAKIF
Sbjct:   16 TDKVIAEYIWIGGSGTDLRSKARTLTGPVNHPSKLPKWNYDGSSTGQAPGEDSEVIYILRQFFKDPFRRGNNILVICDTYTPAGEPIPTNKRHGAAKIF 114          
BLAST of CF417733 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.713e-45
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 2
Query:   95 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 391
            TD IIAEYIWIGG+G+D+RSK+RT+  PV  PS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CDAYTP GEPIPTNKRH AA+IF
Sbjct:   72 TDSIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPQGEPIPTNKRHKAAEIF 170          
BLAST of CF417733 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.629e-45
Identity = 82/99 (82.83%), Postives = 91/99 (91.92%), Query Frame = 2
Query:   95 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 391
            TDKIIAEYIWIGG+G+D+RSK+RT+  PV  PS+LPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFR GNNILV+CD YTP GEPIPTNKRH AA+IF
Sbjct:   76 TDKIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGDDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHKAAQIF 174          
BLAST of CF417733 vs. ExPASy Swiss-Prot
Match: GLNA2_MAIZE (Glutamine synthetase root isozyme 2 OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.045e-45
Identity = 82/99 (82.83%), Postives = 90/99 (90.91%), Query Frame = 2
Query:   95 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 391
            T KIIAEYIW+GGSGMD+RSKARTL GPV DPSKLPKWN+DGSSTGQAPG+DSEVIL P+AIF+DPFR+G NILVMCD Y P GEPIP+NKRH AAKIF
Sbjct:   16 TGKIIAEYIWVGGSGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQAPGDDSEVILCPRAIFRDPFRKGQNILVMCDCYEPNGEPIPSNKRHGAAKIF 114          
The following BLAST results are available for this feature:
BLAST of CF417733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GLNA1_SOYBN1.439e-4686.87Glutamine synthetase cytosolic isozyme 1 OS=Glycin... [more]
GLNA4_PHAVU2.454e-4684.85Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_ORYSJ2.454e-4683.84Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]
GLNAC_MAIZE5.468e-4681.82Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNA2_PEA5.468e-4684.85Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNAC_BRANA1.218e-4584.85Glutamine synthetase, chloroplastic OS=Brassica na... [more]
GLNA1_ALNGL2.078e-4584.85Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA2_MEDSA2.713e-4583.84Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_DAUCA4.629e-4582.83Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA2_MAIZE6.045e-4582.83Glutamine synthetase root isozyme 2 OS=Zea mays GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-663 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417733 ID=CF417733; Name=CF417733; organism=Citrus sinensis; type=EST; length=392bp
TCATTACCAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACA
TGTCTCTGCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGAC
AAGATCATCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAG
GAGCAAAGCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGC
CTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGAT
AGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAG
AGGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAAC
CAATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCA
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