CF417736

Overview
NameCF417736
Unique NameCF417736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 59/135 (43.70%), Postives = 78/135 (57.78%), Query Frame = 2
Query:   89 SMGSFTVELYYKHSPRTCRNFAEL--SRRG--------YYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRL 460
            S G   + L+ K  P+T  NF  L    +G        +Y  SKFHRII  F++Q             SIYG  F DE   +LKHTG G+LSMAN+G +TNGSQFFIT    S LDG+H +FG+V +GM+V+ ++
Sbjct:   44 SAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADE-NFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKI 177          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.184e-21
Identity = 60/129 (46.51%), Postives = 74/129 (57.36%), Query Frame = 2
Query:   95 GSFTVELYYKHSPRTCRNFAELSR--RGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSV 469
            G   +EL     PRT  NF  L    RG+ Y+N  FHR+I  F+ Q             SIYG  F+DE   +L+H G G+LSMAN+GPNTNGSQFFI       LDGKH +FGRV  G  V+K++ SV
Sbjct:   32 GRIVMELRSDIVPRTAENFRALCTGDRGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESV 159          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPID_ASPOR (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae GN=cpr6 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.184e-21
Identity = 59/139 (42.45%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  131 PRTCRNFAEL-------SRRG---YYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 514
            P+T  NF  L        ++G   ++  S FHR+IK F++Q             SIYG  F DE   ELKH    +LSMAN+GP TNGSQFFIT  P  HLDGKH +FG V  G  V++++ ++ T + D+P+ DV I+
Sbjct:   32 PKTAENFRALCTGEKGMGKQGKPLHFKGSIFHRVIKQFMIQGGDFTAFNGTGGESIYGEKFPDE-NFELKHDKPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKVENMNT-QADKPVKDVTIV 168          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPIA_FELCA (Peptidyl-prolyl cis-trans isomerase A OS=Felis catus GN=PPIA PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 3.184e-21
Identity = 60/127 (47.24%), Postives = 74/127 (58.27%), Query Frame = 2
Query:   92 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRL 460
            +G  + +L+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q             SIYG  F+DE    LKHTG GILSMANAGPNTNGSQFFI  A    LDGKH +FG V  GM +++ +
Sbjct:   17 LGRVSFDLFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAM 142          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.184e-21
Identity = 57/133 (42.86%), Postives = 76/133 (57.14%), Query Frame = 2
Query:   95 GSFTVELYYKHSPRTCRNFAEL--SRRG--------YYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRL 460
            G   +EL+ + +P+T  NF  L    +G        ++  S FHR+I DF+ Q             SIYG  F DE   +LKH   G+LSMANAGPNTNGSQFF+T  P   LDGKH +FG V  G+E++++L
Sbjct:   17 GRIVMELFDEVTPKTAENFRALCTGEKGVGKAGKPLHFKGSHFHRVITDFMAQGGDFTRGNGTGGESIYGEKFADE-NFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVVEGLEILEQL 148          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.159e-21
Identity = 64/148 (43.24%), Postives = 79/148 (53.38%), Query Frame = 2
Query:   50 ASDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGS 466
            +S  G P V L+       +G   +EL     P+T  NF  L    +G+ Y  S FHR+I  F+ Q             SIYG  F DE    LKH G G+LSMANAGPNTNGSQFFI       LDGKH +FG V  GM+V+K++ S
Sbjct:   40 SSSSGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIES 186          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.159e-21
Identity = 57/135 (42.22%), Postives = 76/135 (56.30%), Query Frame = 2
Query:   95 GSFTVELYYKHSPRTCRNFAEL----------SRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGS 466
            G   +ELY    P+T  NF  L           ++ ++  SKFHRII +F++Q             SI+G  F+DE   E KHTG G+LSMAN G NTNGSQFF+     + LDGKH +FG+V  GM+V+K + S
Sbjct:   18 GRIVMELYNDIVPKTAENFRALCTGEKGKGKSGKKLHFKGSKFHRIIPEFMIQGGDFTEGNGTGGESIHGEKFDDENFKE-KHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIES 151          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.431e-21
Identity = 62/149 (41.61%), Postives = 84/149 (56.38%), Query Frame = 2
Query:   47 LASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDK 481
            + +DD P        +G  T+EL+    P+T  NF  L    +G+ + +S FHR+I DF+ Q             SIYG  FEDE   ++KHTG G+LSMAN G +TN SQFFITL  A  LD KH +FG V  GM+ +K++ S  + K
Sbjct:  931 ICADDEP--------LGRITMELFSNIVPKTAENFRALCTGEKGFGFKSSIFHRVIPDFVCQGGDITKHDGTGGRSIYGDKFEDE-NFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPK 1070          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPIL4_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Cryptococcus neoformans GN=CYP6 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.431e-21
Identity = 61/167 (36.53%), Postives = 84/167 (50.30%), Query Frame = 2
Query:   74 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHV-------------FEDEIKPELKHTGAGILSMANA--GPNTNGSQFFITLAP-ASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 526
            V LETS+G   ++L     PRTC NF +L +  YY  + F  + K+FI Q            S+  +V             F  EI   LKHT  G LSMA A   P   GSQFFITLA    +LDGKH +FG V  G++ + ++    TDK+ RP+ +++I    +
Sbjct:    3 VMLETSLGDLIIDLEVDKCPRTCENFIKLCKLKYYALNAFFNVSKNFIAQSGDPTATGTGGESLASYVYSQSPSGPRPPRYFTPEILNSLKHTHKGTLSMAVAPINPPGCGSQFFITLADNIDYLDGKHAVFGHVIEGLDTLDKINDAFTDKEGRPLQNIRIRHVEI 169          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPIH_EMENI (Peptidyl-prolyl cis-trans isomerase H OS=Emericella nidulans GN=cyp3 PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.431e-21
Identity = 57/152 (37.50%), Postives = 84/152 (55.26%), Query Frame = 2
Query:   92 MGSFTVELYYKHSPRTCRNFAEL---------SRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 517
            +G   +EL+   +PRT  NF +           R   Y  SKFHR+IKDF++Q             +IYG     +    L+H   G+LSMAN+GPNTNG QFFIT      L+GKH +FG+V  GM++++ + + +T + D+P  DV I++
Sbjct:   29 LGRLKLELFADVTPRTAENFRQFCTGESKNQQGRPQGYKGSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFSDENFTLRHDRPGLLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVIDGMDIVRMIENTRTTR-DKPNQDVVIIQ 179          
The following BLAST results are available for this feature:
BLAST of CF417736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
CP19D_ARATH2.438e-2143.70Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPIE_SCHJA3.184e-2146.51Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
PPID_ASPOR3.184e-2142.45Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPIA_FELCA3.184e-2147.24Peptidyl-prolyl cis-trans isomerase A OS=Felis cat... [more]
PPI2_SYNY33.184e-2142.86Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
PPIF_HUMAN4.159e-2143.24Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
CYP2_CAEEL4.159e-2142.22Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
RBP2_BOVIN5.431e-2141.61E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
PPIL4_CRYNE5.431e-2136.53Peptidyl-prolyl cis-trans isomerase-like 4 OS=Cryp... [more]
PPIH_EMENI5.431e-2137.50Peptidyl-prolyl cis-trans isomerase H OS=Emericell... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-666 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417736 ID=CF417736; Name=CF417736; organism=Citrus sinensis; type=EST; length=716bp
CTGAGTTTCTGGTAGTGTTGTGGTCTTGAAAGCAACAATAAAGATGCTGG
CAAGTGACGACGGTCCGCCGGAGGTCACTTTAGAAACTTCCATGGGCTCT
TTCACCGTCGAGCTTTACTACAAGCACTCTCCAAGAACTTGCAGGAACTT
TGCTGAACTATCTCGCAGAGGTTATTATAATAACAGCAAATTCCACAGAA
TTATTAAGGATTTTATAGTTCAAGGTGGAGATCCTACCGGGACTGGAAGG
GGAGGAGATTCCATATATGGCCATGTTTTCGAAGATGAAATAAAACCAGA
ATTAAAGCATACTGGAGCTGGGATCTTGTCCATGGCAAATGCTGGTCCAA
ATACAAATGGAAGCCAGTTCTTTATCACTTTGGCGCCTGCTTCACATCTG
GATGGAAAGCACACTATATTTGGAAGAGTATGCAGAGGAATGGAAGTGAT
CAAAAGGCTTGGCAGTGTCCAAACTGATAAAGATGACAGGCCCATCCATG
ACGTTAAGATACTACGGACTTCTGTTAAGGACTGATGCCATGAAACGGTT
ATGGAAACCAACGTTTCCACATGATTTTGGGTGCACTAGAGCCAGTGTTC
AAAAATCTGATTCTGAAAATTTCTAACATCTGATTTTGGATGCACTGTAC
TTTGGTATTTTATTGAAACAGAAGGCAAATATGGATCATTTGGTAATTCT
CGTCTTATTTACCATT
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