CF417736

Overview
NameCF417736
Unique NameCF417736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6221 contig Csv1_Contig6221:20..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: SDC10_RAT (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Rattus norvegicus GN=Sdccag10 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.927e-26
Identity = 60/142 (42.25%), Postives = 85/142 (59.86%), Query Frame = 2
Query:   71 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG-MEVIKRLGSVQTDKDDRP 493
            +V L+T+ G   +EL+ K +P+ CRNF +L    YY+N+ FHR++  FIVQ            S+YG  F+DE    L+    G+++MANAGP+ NGSQFF TL  A  L+ KHTIFG+V    +  + RL  V  D ++RP
Sbjct:   14 KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGTGGESVYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLTEVDIDDEERP 155          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPIC_HUMAN (Peptidyl-prolyl cis-trans isomerase C OS=Homo sapiens GN=PPIC PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.517e-26
Identity = 68/154 (44.16%), Postives = 90/154 (58.44%), Query Frame = 2
Query:   83 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 532
            +  +G   + L+ K  P+T  NF  L+   +GY Y  SKFHR+IKDF++Q             SIYG  F DE   +LKH G G +SMANAGP+TNGSQFFITL   + LDGKH +FG+V  GM V+  +    TD  DRP+ +  I+ +   D
Sbjct:   48 DKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGTGGVSIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKID 200          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: SDC10_PONAB (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Pongo abelii GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.287e-26
Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 2
Query:   71 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG-MEVIKRLGSVQTDKDDRPIHDVKI 511
            +V L+T+ G   +EL+ K +P+ CRNF +L    YY+N+ FHR++  FIVQ            SIYG  F+DE    L+    G+++MANAG + NGSQFF TL  A  L+ KHTIFG+V    +  + RL  V  D ++RP +  KI
Sbjct:   14 KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDEERPHNPHKI 161          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: SDC10_MACFA (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Macaca fascicularis GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.287e-26
Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 2
Query:   71 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG-MEVIKRLGSVQTDKDDRPIHDVKI 511
            +V L+T+ G   +EL+ K +P+ CRNF +L    YY+N+ FHR++  FIVQ            SIYG  F+DE    L+    G+++MANAG + NGSQFF TL  A  L+ KHTIFG+V    +  + RL  V  D ++RP +  KI
Sbjct:   14 KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDEERPHNPHKI 161          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.287e-26
Identity = 72/175 (41.14%), Postives = 94/175 (53.71%), Query Frame = 2
Query:   44 MLASDDGP--PEVTLETSMGS-----FTVELYYKHSPRTCRNFAEL--SRRG--------YYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 514
            M A  D P  P V  + S+G       T+ELY    P+T  NF  L    +G        +Y  S FHR+IK F++Q             SIYG+ F+DE  P +KH    +LSMANAGPNTNGSQFFIT  P  HLDGKH +FG V  G  V++++ ++ T   DRP  +  I+
Sbjct:    1 MAAEGDSPARPRVYFDISIGGKSVGRITMELYADLVPKTADNFRSLCTGEKGIGKSGKPLHYKGSVFHRVIKQFMIQGGDFTAGDGTGGESIYGNKFDDEAFP-IKHEKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALIV 174          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPIB_ASPNG (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus niger GN=cypB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.287e-26
Identity = 71/182 (39.01%), Postives = 100/182 (54.95%), Query Frame = 2
Query:   23 VLKATIKMLASDDGPPEVTLETSMGSFTVE------------LYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 520
            VL   + ++ ++D  P     TS   F +E            LY K  P+T  NF  L+   +G+ Y  S FHR+IKDF++Q             SIYG  F DE   +L+HT  G+LSMANAG +TNGSQFFIT  P   LDG+H +FG V  G E++ ++ +V   + DRP+  VKI+++
Sbjct:   13 VLAVGLALVHAEDAQPRGPKITSKVFFDIEHGDKPLGRVVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDFTRGDGTGGKSIYGEKFADE-NFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEIVAQIENVPKGRSDRPVETVKIVKS 193          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.294e-26
Identity = 68/147 (46.26%), Postives = 89/147 (60.54%), Query Frame = 2
Query:   83 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 511
            +  +G   + LY +  P+T  NF  L+   +GY Y NSKFHR+IKDF++Q             SIYG  F DE   +L+HTG GILSMANAG +TNGSQFFIT    S LDG+H +FG+V  GM+V+  + + +T   DRP   V I
Sbjct:   40 DKDLGRIVLGLYGEVVPKTVENFRALATGEKGYGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFADE-NFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVII 185          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.294e-26
Identity = 65/147 (44.22%), Postives = 90/147 (61.22%), Query Frame = 2
Query:   83 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 511
            E   G   + L+ K  P+T  NF  L+   +G+ +  SKFHR+IKDF++Q             SIYG  F DE   +LKH G G +SMANAG +TNGSQFFIT    + LDGKH +FG+V  GM+V++++ + +TD  D+P+ DV I
Sbjct:   45 EEDAGRVVIGLFGKTVPKTVENFVALATGEKGFGFKGSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTI 190          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.294e-26
Identity = 67/151 (44.37%), Postives = 90/151 (59.60%), Query Frame = 2
Query:   92 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 532
            +G   + LY K  P+T  NF  L+   +G+ Y  S FHR+IKDF++Q             SIYG+ FEDE   +L+HT  G+LSMANAG +TNGSQFFIT A  + LDGKH +FG V  G +++ ++  V     DRP  DVKI++    D
Sbjct:   48 LGRIVMGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDFTNGDGTGGKSIYGNKFEDE-NFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEVLEGYDIVDKIQVVPKGFQDRPTKDVKIVKCGELD 197          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.294e-26
Identity = 65/144 (45.14%), Postives = 89/144 (61.81%), Query Frame = 2
Query:   92 MGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 511
            +G   + L+ +  P+T +NF EL++R     Y  SKFHR+I++F++Q             SIYG  FEDE   +L+H G G LSMANAG +TNGSQFFIT A  S LDGKH +FG++  GM+V++ + +      DRPI DV I
Sbjct:   39 VGKIVIGLFGEVVPKTVKNFVELAQRAEGEGYVGSKFHRVIENFMIQGGDFTRGDGTGGRSIYGERFEDE-NFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVI 181          
The following BLAST results are available for this feature:
BLAST of CF417736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
SDC10_RAT1.927e-2642.25Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ra... [more]
PPIC_HUMAN2.517e-2644.16Peptidyl-prolyl cis-trans isomerase C OS=Homo sapi... [more]
SDC10_PONAB3.287e-2641.89Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Po... [more]
SDC10_MACFA3.287e-2641.89Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ma... [more]
PPID_GIBZE3.287e-2641.14Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]
PPIB_ASPNG3.287e-2639.01Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIB_ORPSP4.294e-2646.26Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PPIB_CHICK4.294e-2644.22Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
PPIB_ARTBE4.294e-2644.37Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]
CYP6_CAEEL4.294e-2645.14Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-666 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417736 ID=CF417736; Name=CF417736; organism=Citrus sinensis; type=EST; length=716bp
CTGAGTTTCTGGTAGTGTTGTGGTCTTGAAAGCAACAATAAAGATGCTGG
CAAGTGACGACGGTCCGCCGGAGGTCACTTTAGAAACTTCCATGGGCTCT
TTCACCGTCGAGCTTTACTACAAGCACTCTCCAAGAACTTGCAGGAACTT
TGCTGAACTATCTCGCAGAGGTTATTATAATAACAGCAAATTCCACAGAA
TTATTAAGGATTTTATAGTTCAAGGTGGAGATCCTACCGGGACTGGAAGG
GGAGGAGATTCCATATATGGCCATGTTTTCGAAGATGAAATAAAACCAGA
ATTAAAGCATACTGGAGCTGGGATCTTGTCCATGGCAAATGCTGGTCCAA
ATACAAATGGAAGCCAGTTCTTTATCACTTTGGCGCCTGCTTCACATCTG
GATGGAAAGCACACTATATTTGGAAGAGTATGCAGAGGAATGGAAGTGAT
CAAAAGGCTTGGCAGTGTCCAAACTGATAAAGATGACAGGCCCATCCATG
ACGTTAAGATACTACGGACTTCTGTTAAGGACTGATGCCATGAAACGGTT
ATGGAAACCAACGTTTCCACATGATTTTGGGTGCACTAGAGCCAGTGTTC
AAAAATCTGATTCTGAAAATTTCTAACATCTGATTTTGGATGCACTGTAC
TTTGGTATTTTATTGAAACAGAAGGCAAATATGGATCATTTGGTAATTCT
CGTCTTATTTACCATT
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