CF417736

Overview
NameCF417736
Unique NameCF417736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6221 contig Csv1_Contig6221:20..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: NKTR_MOUSE (NK-tumor recognition protein OS=Mus musculus GN=Nktr PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.605e-23
Identity = 63/157 (40.13%), Postives = 88/157 (56.05%), Query Frame = 2
Query:   92 MGSFTVELYYKHSPRTCRNFAEL-----------SRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 526
            +G    +L+    P+TC+NF  L            ++  Y  S FHR++K+F++Q             SIYG  F+DE    LKH  A +LSMAN G +TNGSQFFIT  PA HLDG H +FG V  G EVI+++ +++TD   RP  DV+++   V
Sbjct:   20 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGV 175          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: NKTR_HUMAN (NK-tumor recognition protein OS=Homo sapiens GN=NKTR PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.605e-23
Identity = 63/157 (40.13%), Postives = 88/157 (56.05%), Query Frame = 2
Query:   92 MGSFTVELYYKHSPRTCRNFAEL-----------SRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 526
            +G    +L+    P+TC+NF  L            ++  Y  S FHR++K+F++Q             SIYG  F+DE    LKH  A +LSMAN G +TNGSQFFIT  PA HLDG H +FG V  G EVI+++ +++TD   RP  DV+++   V
Sbjct:   20 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGV 175          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPIH_USTMA (Peptidyl-prolyl cis-trans isomerase H (Fragment) OS=Ustilago maydis GN=CYP3 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.402e-23
Identity = 65/151 (43.05%), Postives = 83/151 (54.97%), Query Frame = 2
Query:   86 TSMGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 511
            T  G    EL+    PRT  NF +L    +        Y NS FHRIIKDF+ Q             SIYG  F+DE    LKH  AG+LSMAN+GP TNG QFFIT  P   LDGKH +FG+V  G+  ++++ +V T  ++RP   V+I
Sbjct:    1 TPAGRLKCELFSDIVPRTSENFRQLCTGEFRPNHVPEGYKNSIFHRIIKDFMCQGGDFINADGTGSRSIYGDKFDDE-NFTLKHDKAGLLSMANSGPGTNGCQFFITAQPCPFLDGKHVVFGKVVDGLLTLRKMENVPTGANNRPKMAVRI 150          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.402e-23
Identity = 64/147 (43.54%), Postives = 82/147 (55.78%), Query Frame = 2
Query:   86 TSMGSFTVELYYKHSPRTCRNFAEL--SRRG--------YYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRP 493
            T +G    ELY    P+T  NF  L    +G        +Y  S FHR+IK+F+VQ             SIYG  F DE    +KH   G LSMANAG NTNGSQFFIT A   HL+G HT+FG V  G +++K++ + +TD+ DRP
Sbjct:   18 TPLGRVVFELYNDIVPKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDE-NFLVKHK-IGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRP 162          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.803e-23
Identity = 66/152 (43.42%), Postives = 83/152 (54.61%), Query Frame = 2
Query:   95 GSFTVELYYKHSPRTCRNFAEL--SRRGY--------YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 517
            G    EL+    P+T  NF  L    +G         Y  S FHRIIK+F++Q             SIYG  FEDE    LKH    +LSMANAGP TNGSQFFIT  P  HLDGKH +FG+V +G  V++ L +++T   DRP+ D  I +
Sbjct:   18 GRIVFELFKDIVPKTAENFRALCTGEKGEGKSGKPLSYQGSLFHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDE-NFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLET-VSDRPVEDAVIAK 167          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.803e-23
Identity = 67/150 (44.67%), Postives = 83/150 (55.33%), Query Frame = 2
Query:   23 VLKATIKMLASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRL 460
            ++  T+    S DG P       +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q             SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDGKH +FG+V  GM +++ +
Sbjct:    1 MVNPTVFFDISADGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: CYPR_DROME (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Drosophila melanogaster GN=ninaA PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.803e-23
Identity = 61/146 (41.78%), Postives = 81/146 (55.48%), Query Frame = 2
Query:   92 MGSFTVELYYKHSPRTCRNFAELSRRGY----YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKP-ELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 511
            +G  T  L+ K +P+T  NF  +  RG     Y  S+FHR++  F+VQ             SIYG  F DE K   ++H   G L MAN GP+TNG QF++T   A  LDGKHT+FG+V  GM+ I  +  V+TD DD P+  V I
Sbjct:   40 VGRITFGLFGKLAPKTVANFRHICLRGINGTSYVGSRFHRVVDRFLVQGGDIVNGDGTGSISIYGDYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDGKHTVFGKVLEGMDTIYAIEDVKTDTDDFPVEPVVI 185          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.803e-23
Identity = 63/134 (47.01%), Postives = 77/134 (57.46%), Query Frame = 2
Query:   86 TSMGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQT 475
            T +G    ELY    P+T  NF  L    +G+ Y    FHRII DF++Q             SIYG  F DE   + KH  AG+LSMANAGPNTNGSQFFIT  P   LDGKH +FG V +GM+++K + S  T
Sbjct:   33 TKIGRIEFELYDNVVPKTAENFRALCTGEKGWGYKGVPFHRIIPDFMIQGGDTDLTNGFGGKSIYGSKFADENFVK-KHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGT 165          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.803e-23
Identity = 59/155 (38.06%), Postives = 85/155 (54.84%), Query Frame = 2
Query:   83 ETSMGSFTVELYYKHSPRTCRNFAEL-----------SRRGYYNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 511
            E  +G   + L+ + +P+TC NF  L             R +Y  ++FHRI+K F++Q             SIYG  F+DE K +LKH+   +LSMAN GPN+N SQFFIT A A H +GKH +FG V +G  V+  + ++  D   +P+  V I
Sbjct:   15 ENLIGRIEIRLFVEDAPKTCENFRALCTGEVGMTPNNKARLHYKQNEFHRIVKKFMIQGGDITEGDGRGGFSIYGRYFDDE-KFKLKHSRPYLLSMANKGPNSNSSQFFITTAAAPHCNGKHVVFGEVVKGQNVVDYIDNLAVDDKSKPLAKVLI 168          
BLAST of CF417736 vs. ExPASy Swiss-Prot
Match: PPIB_ASPOR (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae GN=cpr2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.579e-23
Identity = 61/147 (41.50%), Postives = 87/147 (59.18%), Query Frame = 2
Query:   92 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXXXXXXX-SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 520
            +G   + LY K  P+T  NF  L+   +G+ Y  S FHR+IK+F++Q             SIYG  F+DE   +++HT  G+LSMANAG +TNGSQFFIT      LDG+H +FG V  G EV++ + +V     D+P   VKI+++
Sbjct:   33 LGRVVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKEFMIQGGDFTRGDGTGGKSIYGEKFKDE-NFKIRHTKKGLLSMANAGKDTNGSQFFITTVATPWLDGRHVVFGEVLEGYEVVEAIENVPKVPGDKPQQVVKIVKS 178          
The following BLAST results are available for this feature:
BLAST of CF417736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
NKTR_MOUSE2.605e-2340.13NK-tumor recognition protein OS=Mus musculus GN=Nk... [more]
NKTR_HUMAN2.605e-2340.13NK-tumor recognition protein OS=Homo sapiens GN=NK... [more]
PPIH_USTMA3.402e-2343.05Peptidyl-prolyl cis-trans isomerase H (Fragment) O... [more]
PPID_DICDI3.402e-2343.54Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
PPID_RHIOR5.803e-2343.42Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPIA_CRIGR5.803e-2344.67Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
CYPR_DROME5.803e-2341.78Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
CYPC_YEAST5.803e-2347.01Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
CYP9_CAEEL5.803e-2338.06Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIB_ASPOR7.579e-2341.50Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-666 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417736 ID=CF417736; Name=CF417736; organism=Citrus sinensis; type=EST; length=716bp
CTGAGTTTCTGGTAGTGTTGTGGTCTTGAAAGCAACAATAAAGATGCTGG
CAAGTGACGACGGTCCGCCGGAGGTCACTTTAGAAACTTCCATGGGCTCT
TTCACCGTCGAGCTTTACTACAAGCACTCTCCAAGAACTTGCAGGAACTT
TGCTGAACTATCTCGCAGAGGTTATTATAATAACAGCAAATTCCACAGAA
TTATTAAGGATTTTATAGTTCAAGGTGGAGATCCTACCGGGACTGGAAGG
GGAGGAGATTCCATATATGGCCATGTTTTCGAAGATGAAATAAAACCAGA
ATTAAAGCATACTGGAGCTGGGATCTTGTCCATGGCAAATGCTGGTCCAA
ATACAAATGGAAGCCAGTTCTTTATCACTTTGGCGCCTGCTTCACATCTG
GATGGAAAGCACACTATATTTGGAAGAGTATGCAGAGGAATGGAAGTGAT
CAAAAGGCTTGGCAGTGTCCAAACTGATAAAGATGACAGGCCCATCCATG
ACGTTAAGATACTACGGACTTCTGTTAAGGACTGATGCCATGAAACGGTT
ATGGAAACCAACGTTTCCACATGATTTTGGGTGCACTAGAGCCAGTGTTC
AAAAATCTGATTCTGAAAATTTCTAACATCTGATTTTGGATGCACTGTAC
TTTGGTATTTTATTGAAACAGAAGGCAAATATGGATCATTTGGTAATTCT
CGTCTTATTTACCATT
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