CF417740

Overview
NameCF417740
Unique NameCF417740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: NUDF_EMENI (Nuclear distribution protein nudF OS=Emericella nidulans GN=nudF PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 3
Query:  261 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAF-SPNGEYLASGSLDKSMHIWSLKEG---KIVKTYT 674
            T   H+  V CV + P  + LAS S+D T KIW+ +  +    L+ H + +       +G          +LAS S D T+KLWD       + +L+GH   V S+ F + N  +L S S D ++ IW +  G   K++K+ T
Sbjct:  109 TLTSHRDAVTCVAFHPVFTSLASGSEDCTIKIWDWELGEIERTLKGHIRGV-------SGLDYGGQKGNTLLASCSSDLTIKLWDPSKDYANIRTLSGHDHSVSSVRFLTSNDNHLISASRDGTLRIWDVSTGFCVKVIKSAT 244          
BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: CIAO1_PICST (Probable cytosolic iron-sulfur protein assembly protein 1 OS=Pichia stipitis GN=CIA1 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 64/259 (24.71%), Postives = 108/259 (41.70%), Query Frame = 3
Query:   12 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF----EFHSG-----------PTLDVDWRNNVSFATSSTDNMIYVCKIGENRP------------IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW-----NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS----LNGHREPVYSLAFSPNGEY-------------LASGSLDKSMHIWS 641
            ++  H    +S+  +K    L T S DKT+ ++ +  ++   Q     + H             P ++ ++ +  + A+ S D+ I +  I E               +    GH+ E+  V W+  GSLLASCS D T  IW      +++ + +  L +H  +I  + W P          Q +LAS+S+D T++L+  +L    +S    LNGH   V+   F  N  +             L S S D +  IWS
Sbjct:    7 SIKAHSDKAWSVSAHKTVPLLATASTDKTSKIYKLSVKQNFPQVAQLEDTHKRSVRAVSFKPPLPGVESNFLDLPALASGSFDSTISIWGIDEPETEILSSPRNEWNLMAIIEGHENEIKAVGWNHNGSLLASCSRDKTVWIWETDPETLEEFECISVLNDHQHDIKHVVWHP---------HQNLLASSSYDDTIRLYKQDLDDDDWSCVGVLNGHEGTVWCSQFEDNHRHQESNESSNRSKIRLVSVSDDMTARIWS 256          
BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: WDR3_DICDI (WD repeat-containing protein 3 homolog OS=Dictyostelium discoideum GN=wdr3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 42/197 (21.32%), Postives = 89/197 (45.18%), Query Frame = 3
Query:   63 GDYLLTGSCDKTAIVWDVKTEEWKQQF---EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSL 644
            G   +TG C +   +WD++ +   Q     +  +  T     ++    A+  +D  I +  + + +    F GH+G V  + ++  G++L S S D    +W++  +  +  LR H  +I +++     +          L ++S D  +K+WD E    + ++ GHR P++ +  +P+   L S + D  +  W +
Sbjct:   28 GKLAITG-CGERISIWDLRKQVLNQSLYEEDIKAEVTNVCLSKDGALLASGYSDGSIRIWSMSDYQLQAVFNGHRGSVTTMTFNRLGNILVSGSKDTEVIVWDIITESGLFRLRGHRDQITSVKLLERSNH---------LITSSKDGFIKIWDTETQHCIQTIVGHRNPIWGIDVNPDETRLCSCTSDNQIRFWRI 214          
BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: SEC13_NEUCR (Protein transport protein sec-13 OS=Neurospora crassa GN=sec-13 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 60/237 (25.32%), Postives = 106/237 (44.73%), Query Frame = 3
Query:   18 SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK--QQFEFHSGPTLDVDWRN----NVSFATSSTDNMIYVCK--IGENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDL-REHSKEIYTIRWSPTGSG----TNNP------NQQLILASASFDSTVKLWDVELGKLLYSLN-----GHREPVYSLAFSPN---GEYLASGSLDKSMHIWS 641
            S H   I     +  G  L T S D+T  +++++ E  +  +  + H G    V W +    N+  A++  D  + + +   G  + I  FA H+  VN V W P   G LLA  S D    +   K + + H++   H   + ++ W+P  +     ++NP      N++ +   +  D+ +K+W  +     Y L      GH + V  +A+SP      Y+AS S DK++ IW+
Sbjct:   11 SGHDDMIHDAVLDYYGRRLATCSSDRTIKIFEIEGESQRLVETLKGHDGAVWSVAWAHPKYGNI-LASAGYDGKVLIWREQAGSWQRIFDFALHKASVNIVSWSPHEAGCLLACASSDGNVSVLEFKDNSWEHNIFHAHGLGVNSVSWAPATTPGSIVSSNPGPGSTGNRRFVTGGS--DNLLKIWTFDPATNGYKLEREPLAGHTDWVRDVAWSPTVLQKSYIASASQDKTVRIWT 244          
BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: GRWD1_HUMAN (Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens GN=GRWD1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 49/179 (27.37%), Postives = 76/179 (42.46%), Query Frame = 3
Query:   24 HKGPIFSLKWNKK-GDYLLTGSCDKTAIVWD-VKTEEW---KQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKI----GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY---VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 518
            H G  F+L W+ +    LLTG C K   +W       W   ++ F  H+    D+ W    N  FA+ S D  I +  I     +   + T   H G+VN + W      L S  DD   KIW+++Q K    V   ++H   + ++ W P  SG        + A++  D  +  WD+
Sbjct:  213 HMGEGFALDWSPRVTGRLLTGDCQKNIHLWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVISWSRREPFLLSGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSG--------VFAASGADHQITQWDL 383          
BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: COR1B_PONAB (Coronin-1B OS=Pongo abelii GN=CORO1B PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 42/143 (29.37%), Postives = 69/143 (48.25%), Query Frame = 3
Query:  261 TFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLRE-------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIV 662
            T  GH G V  + W P    ++AS S+D T  +W + ++     L E       H+K +  I W PT           +L SA  D+ V +W+V   + LY L+  H + +Y+++++ NG    S   DKS+ I   ++G +V
Sbjct:   77 TVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLTSPLTEPVVVLEGHTKRVGIIAWHPTARN--------VLLSAGCDNVVLIWNVGTAEELYRLDSLHPDLIYNVSWNRNGSLFCSACKDKSVRIIDPRQGTLV 211          
The following BLAST results are available for this feature:
BLAST of CF417740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 466
Match NameE-valueIdentityDescription
NUDF_EMENI5.982e-1131.47Nuclear distribution protein nudF OS=Emericella ni... [more]
CIAO1_PICST5.982e-1124.71Probable cytosolic iron-sulfur protein assembly pr... [more]
WDR3_DICDI7.813e-1121.32WD repeat-containing protein 3 homolog OS=Dictyost... [more]
SEC13_NEUCR7.813e-1125.32Protein transport protein sec-13 OS=Neurospora cra... [more]
GRWD1_HUMAN7.813e-1127.37Glutamate-rich WD repeat-containing protein 1 OS=H... [more]
COR1B_PONAB7.813e-1129.37Coronin-1B OS=Pongo abelii GN=CORO1B PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-670 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417740 ID=CF417740; Name=CF417740; organism=Citrus sinensis; type=EST; length=676bp
ATCTGAAGTGTACCTTGAGTAAACATAAAGGACCCATATTTTCCCTTAAG
TGGAACAAGAAGGGTGATTACCTTCTCACCGGAAGCTGTGATAAAACTGC
AATAGTATGGGATGTGAAGACAGAGGAATGGAAACAGCAATTTGAATTTC
ATTCAGGTCCAACGCTTGATGTTGACTGGCGCAATAATGTTTCATTTGCC
ACAAGCTCGACAGACAACATGATATATGTGTGTAAAATTGGGGAAAACCG
CCCTATTAAAACTTTTGCAGGGCATCAGGGTGAGGTTAACTGTGTTAAAT
GGGATCCAACAGGTTCGTTGTTGGCCTCTTGCTCAGATGACGTCACTGCC
AAGATATGGAACATGAAGCAGGACAAGTATGTTCATGATTTGAGAGAGCA
TTCCAAGGAGATATATACTATCAGATGGAGTCCTACAGGATCAGGGACGA
ATAATCCTAACCAGCAATTGATCCTAGCGAGTGCTTCTTTCGACTCTACA
GTAAAGCTTTGGGATGTAGAGCTAGGGAAACTCCTCTACAGTTTGAATGG
ACACAGGGAACCTGTGTACTCGCTCGCATTTAGCCCTAATGGGGAGTATT
TAGCAAGTGGATCTCTTGATAAATCCATGCACATCTGGTCACTGAAGGAA
GGAAAGATTGTGAAGACGTACACTGG
back to top