CF417741
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 8.299e-40 Identity = 75/93 (80.65%), Postives = 85/93 (91.40%), Query Frame = 1 Query: 409 YGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684 YGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC PE+L+K+G KFGEAVWFKAGAQIFSEG Sbjct: 37 YGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEG 129
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.415e-39 Identity = 74/92 (80.43%), Postives = 79/92 (85.87%), Query Frame = 1 Query: 409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684 YG DR YLGP S PSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIH RWA+ LGCVFPE+L++NGVKFGE VWFKAG+QIFSEG Sbjct: 49 YGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEG 140
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.415e-39 Identity = 76/93 (81.72%), Postives = 80/93 (86.02%), Query Frame = 1 Query: 409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEG 684 YGPDR KYLGPFS QTPSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L K V F E VWFKAG+QIFS+G Sbjct: 48 YGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDG 140
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 9.176e-39 Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 1 Query: 409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEG 684 YGPDR K+LGPFS TP+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH+RWA+LGALG + PE+LS GVKFGE VWFKAGAQIFSEG Sbjct: 40 YGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEG 132
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.855e-37 Identity = 75/92 (81.52%), Postives = 80/92 (86.96%), Query Frame = 1 Query: 409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684 YGPDR KYLGPFS + PSYLTGEF G LSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEG Sbjct: 49 YGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 132
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 8.588e-37 Identity = 74/88 (84.09%), Postives = 77/88 (87.50%), Query Frame = 1 Query: 421 RPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684 R KYLGPFS + PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIHSR AM ALGC+FPE+LS G FGEAVWFKAGAQIFSEG Sbjct: 58 RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEG 145
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.913e-36 Identity = 71/94 (75.53%), Postives = 84/94 (89.36%), Query Frame = 1 Query: 409 YGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEG 684 YGPDR K+LGPFSE TP YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH+RWA+LGALG + PE+LS+ GV+FGE VWFKAGAQIF++G Sbjct: 34 YGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADG 127
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.774e-25 Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 1 Query: 409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS-KNGVKFGE-AVWFKAGAQIFSEG 684 YGPD Q P TGEFPGDYGWDTAGLSADPETF + RELE+IH+R +LGALG V PE+L+ ++G+KFG+ A+WFKAGA IF +G Sbjct: 58 YGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDG 150
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18 Identity = 48/90 (53.33%), Postives = 56/90 (62.22%), Query Frame = 1 Query: 409 YGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGA 666 YGPDR +L + P YL GE GDYG+D GL PE FAK + E+IH+RWAMLGA G + PE L+K G G EAVWFK GA Sbjct: 63 YGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGA 152
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14 Identity = 39/85 (45.88%), Postives = 50/85 (58.82%), Query Frame = 1 Query: 415 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQ 669 PDRP + P +L G PGD+G+D GL +DPE+ N + E++HSRWAMLGA G PE L+K GV W+ AG Q Sbjct: 63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ 144 The following BLAST results are available for this feature:
BLAST of CF417741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 62
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417741 ID=CF417741; Name=CF417741; organism=Citrus sinensis; type=EST; length=686bpback to top |