CF417742

Overview
NameCF417742
Unique NameCF417742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF417742 vs. ExPASy Swiss-Prot
Match: RANB9_XENTR (Ran-binding protein 9 OS=Xenopus tropicalis GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.001e-14
Identity = 25/80 (31.25%), Postives = 40/80 (50.00%), Query Frame = 2 
Query:  248 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHG 487
            +L +S   L V Y        D   V++  P P    ++YFE+ +   G  G + IG +++   + R PGW+ +S GYHG
Sbjct:   32 YLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLSRLPGWDKHSYGYHG 111

HSP 2 Score: 44.2838 bits (103), Expect = 3.001e-14
Identity = 18/46 (39.13%), Postives = 27/46 (58.70%), Query Frame = 1 
Query:  523 GEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLF 660
            G+ +GPTFTT D +G  +N      F+TKNG  +G  + D+   L+
Sbjct:  123 GQPYGPTFTTGDVIGCCVNLIDNTCFYTKNGHSLGIAFTDLPPNLY 168
The following BLAST results are available for this feature:
BLAST of CF417742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RANB9_XENTR3.001e-1431.25Ran-binding protein 9 OS=Xenopus tropicalis GN=ran... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-672 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417742 ID=CF417742; Name=CF417742; organism=Citrus sinensis; type=EST; length=660bp
AAGTTACGAACTCCGAACTCTCCTGCTCATGTATGATTCTTTGAAACAAG
TGTAGGGTTTCACTTTATGCCAATTCCAAACAATGAGCACAAACAACACT
AACAACATTAAAAATGAAGATCTCGGCTTGCACTTCCTCGCGCTGGCCCG
GGCTTCTTCGAGCTCGATGGGCGGAAAGCGGGAGGAGGAGGATTTTGAGG
AAGAAGAGGTGCCGACGGAGCTGAACACGATCAACAGCTCTGGAGGGTTC
CTGGTGGTTTCGCCGGATAAGTTGTCGGTCAAGTACACTAGCGTCAATCT
GCACGGCCATGATGTCGGCGTCGTCCAAGCTAACAAGCCGGCTCCTGTTA
AGCGGCTTGTTTATTACTTTGAGATTTACGTGGAGGACGCTGGTGCCAAG
GGCCAGATTGCCATTGGATTTACCAGTGAGTCTTTCAAGATGCGGAGGCA
ACCAGGGTGGGAAGCGAACAGTTGTGGATACCATGGGGNATGATGGATTG
CTTTATCGTGGACAAGGAAAAGGGAGAGGCCTTTGGCCCTACGTTTACAA
CTAATGATACTGTTGGTGGTGGTATTAACTATGCTTCACAGGAATTTTTT
TTCACTAAAAATGGTTCATTAGTAGGAGCAGTGTACAAGGACATCAAGGG
TCCCTTGTTT
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