CF417744

Overview
NameCF417744
Unique NameCF417744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_MYCLE (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium leprae GN=clpC PE=3 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.745e-40
Identity = 95/211 (45.02%), Postives = 126/211 (59.72%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPT------LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            MFERFT++A +V++LAQEEAR L HN++                AAK L S+GI+L+  R +VE IIG+G    +  IPFTPRAK+VLELSL EA QLGHNYIG+             VAA+VL  LGA+ + +R QVI++                   +  +      L+++G NLT  A E KLDPV+GR+ +IERV+Q+L RRTKNN
Sbjct:    1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLDSLGISLEAVRSQVEDIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPSTSLVLDQFGRNLTAAAMESKLDPVIGREKEIERVMQVLSRRTKNN 211          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.887e-40
Identity = 90/213 (42.25%), Postives = 120/213 (56.34%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVI--------RMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            MFE+FTE AIKVIML+QEEARR+GHNFV                 A+ LK   + LK AR E+E  IGRG+GFVA EIPFTPRAKRVLE+++ E + LG N++G+             VA R L+ LG +   +R  ++         +                  +  PTL+EY  N++K A +GKLDPV+GR  +I  V+++L RR KNN
Sbjct:    1 MFEKFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQRHGIGARALKKQKVTLKKARREIELYIGRGTGFVASEIPFTPRAKRVLEMAVHEGKDLGQNFVGTEHILLALISESDGVAMRTLDKLGVNIPKLRNLILMYIEENQEEILRPLTQAEKFLLEREKKGSSTPTLDEYSENISKEAVDGKLDPVIGRDKEIHEVIKVLARRRKNN 213          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.529e-36
Identity = 89/206 (43.20%), Postives = 119/206 (57.77%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXN-KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            MF RFTE+A KV+ L+QEEA RLGHN +                AAK L+S+G+ +   + EVEK+IG G       I +TPRAK+V+ELS +EAR+LGH+Y+G+             VAARVL NLG   +  R QV+++                  N   PTL+    +LT  A+EGK+DPV+GR  +IERV+Q+L RRTKNN
Sbjct:    2 MFGRFTERAQKVLALSQEEAVRLGHNNIGTEHILLGLVREGEGIAAKALQSLGLEVSKIQEEVEKLIGVGKQ-PTQSIHYTPRAKKVVELSQDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESQAGRQGRSGQQSNASTPTLDSLARDLTVSAKEGKIDPVIGRSKEIERVIQVLSRRTKNN 206          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.908e-36
Identity = 85/205 (41.46%), Postives = 120/205 (58.54%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            MF RFTE+A KV+ LAQEEA RLGHN +                AAK L+++G+  +  + EVE +IGRG   ++  I +TPRAK+V+ELS++EAR+LGH+Y+G+             VAARVL NLG   +  R QV+++                     PTL+    +LT +A+E  LDPV+GR  +I+RV+++L RRTKNN
Sbjct:    2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQE-MSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSNA--NTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNN 203          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAAW (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 79/205 (38.54%), Postives = 111/205 (54.15%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            +F R TE+A +V+  AQEEA RL H+ +                AAKVL+S  I       EVEK+IG G   V   + +TPRAK+V+ELS++EAR+L HN++G+             VAARV  NL  + +  R QV++                   N  PTL+    +LT +A++G LDPV+GR  +I RV+++L RRTKNN
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGNPEMSNKNAQASKS--NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNN 203          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAAS (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 79/205 (38.54%), Postives = 111/205 (54.15%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            +F R TE+A +V+  AQEEA RL H+ +                AAKVL+S  I       EVEK+IG G   V   + +TPRAK+V+ELS++EAR+L HN++G+             VAARV  NL  + +  R QV++                   N  PTL+    +LT +A++G LDPV+GR  +I RV+++L RRTKNN
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGNPEMSNKNAQASKS--NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNN 203          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAAR (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 79/205 (38.54%), Postives = 111/205 (54.15%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            +F R TE+A +V+  AQEEA RL H+ +                AAKVL+S  I       EVEK+IG G   V   + +TPRAK+V+ELS++EAR+L HN++G+             VAARV  NL  + +  R QV++                   N  PTL+    +LT +A++G LDPV+GR  +I RV+++L RRTKNN
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGNPEMSNKNAQASKS--NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNN 203          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAAN (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 79/205 (38.54%), Postives = 111/205 (54.15%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            +F R TE+A +V+  AQEEA RL H+ +                AAKVL+S  I       EVEK+IG G   V   + +TPRAK+V+ELS++EAR+L HN++G+             VAARV  NL  + +  R QV++                   N  PTL+    +LT +A++G LDPV+GR  +I RV+++L RRTKNN
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGNPEMSNKNAQASKS--NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNN 203          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAAM (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpC PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 79/205 (38.54%), Postives = 111/205 (54.15%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            +F R TE+A +V+  AQEEA RL H+ +                AAKVL+S  I       EVEK+IG G   V   + +TPRAK+V+ELS++EAR+L HN++G+             VAARV  NL  + +  R QV++                   N  PTL+    +LT +A++G LDPV+GR  +I RV+++L RRTKNN
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGNPEMSNKNAQASKS--NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNN 203          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAAC (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 79/205 (38.54%), Postives = 111/205 (54.15%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            +F R TE+A +V+  AQEEA RL H+ +                AAKVL+S  I       EVEK+IG G   V   + +TPRAK+V+ELS++EAR+L HN++G+             VAARV  NL  + +  R QV++                   N  PTL+    +LT +A++G LDPV+GR  +I RV+++L RRTKNN
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGNPEMSNKNAQASKS--NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNN 203          
The following BLAST results are available for this feature:
BLAST of CF417744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
CLPC_MYCLE1.745e-4045.02Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_ODOSI3.887e-4042.25ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_OCEIH1.529e-3643.20Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]
CLPC_BACSU9.908e-3641.46Negative regulator of genetic competence clpC/mecB... [more]
CLPC_STAAW2.138e-3038.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAS2.138e-3038.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAR2.138e-3038.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAN2.138e-3038.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAM2.138e-3038.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAC2.138e-3038.54ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-674 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417744 ID=CF417744; Name=CF417744; organism=Citrus sinensis; type=EST; length=699bp
TGTGATTTCCATTCCACGGTGGCTGTTTCACTCTCTTCTAGACGAGGAAA
GTCTGGAAGAGCTGGTGGATTTGTTGTTAAAGCCATGTTTGAGCGCTTCA
CAGAGAAAGCAATTAAAGTGATTATGCTTGCCCAAGAGGAAGCAAGACGG
CTTGGCCACAATTTTGTTGGCACGGAGCAAATTCTATTGGGTCTTATTGG
TGAAGGCACTGGCATTGCTGCTAAGGTTCTTAAATCAATGGGAATCAATC
TTAAAGATGCACGTGTAGAAGTGGAGAAGATAATTGGAAGGGGAAGTGGT
TTTGTTGCTGTGGAAATTCCGTTCACTCCTCGTGCAAAGCGTGTCTTGGA
GCTTTCTCTGGAGGAAGCCCGCCAGCTGGGCCATAATTATATTGGGTCCG
AGCATCTTCTCCTTGGGCTTCTTCGTGAAGGGGAAGGTGTAGCAGCCCGT
GTTCTTGAGAATTTAGGTGCTGACCCTAGTAACATCCGCACACAGGTTAT
TCGTATGGTTGGTGAGAGCACAGAAGCTGTTGGCGCTGGTGTTGGAGGAG
GAAGCAGTGGCAACAAGATGCCAACACTGGAGGAGTATGGAACAAATTTG
ACTAAGCTAGCAGAGGAGGGAAAATTGGATCCTGTTGTTGGGAGACAGCC
ACAAATAGAGCGTGTTGTCCAAATTTTGGGCCGTCGAACTAAGAATAAT
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