CF417744

Overview
NameCF417744
Unique NameCF417744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5239 contig Csv1_Contig5239:296..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAAB (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 79/205 (38.54%), Postives = 111/205 (54.15%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            +F R TE+A +V+  AQEEA RL H+ +                AAKVL+S  I       EVEK+IG G   V   + +TPRAK+V+ELS++EAR+L HN++G+             VAARV  NL  + +  R QV++                   N  PTL+    +LT +A++G LDPV+GR  +I RV+++L RRTKNN
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGNPEMSNKNAQASKS--NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNN 203          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 79/205 (38.54%), Postives = 111/205 (54.15%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            +F R TE+A +V+  AQEEA RL H+ +                AAKVL+S  I       EVEK+IG G   V   + +TPRAK+V+ELS++EAR+L HN++G+             VAARV  NL  + +  R QV++                   N  PTL+    +LT +A++G LDPV+GR  +I RV+++L RRTKNN
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGNPEMSNKNAQASKS--NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNN 203          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAA3 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 79/205 (38.54%), Postives = 111/205 (54.15%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            +F R TE+A +V+  AQEEA RL H+ +                AAKVL+S  I       EVEK+IG G   V   + +TPRAK+V+ELS++EAR+L HN++G+             VAARV  NL  + +  R QV++                   N  PTL+    +LT +A++G LDPV+GR  +I RV+++L RRTKNN
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGNPEMSNKNAQASKS--NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNN 203          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.386e-29
Identity = 79/205 (38.54%), Postives = 110/205 (53.66%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            +F R TE+A +V+  AQEEA RL H+ +                AAKVL+S  I       EVEK+IG G       + +TPRAK+V+ELS++EAR+L HN++G+             VAARV  NL  + +  R QV++                   N  PTL+    +LT +A++G LDPVVGR  +I RV+++L RRTKNN
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDQTGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGSPEMSNKNATANKS--NNTPTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNN 203          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.364e-29
Identity = 77/205 (37.56%), Postives = 112/205 (54.63%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            +F R TE+A +V+  AQEEA RL H+ +                AAKVL++  I  +    EVEK+IG G   +   + +TPRAK+V+ELS++EAR+L HN++G+             VAARV  NL  + +  R QV++                   N  PTL+    +LT +A++G LDPV+GR  +I RV+++L RRTKNN
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLETFEITEEKVVEEVEKLIGHGQEQMGA-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGSPEMSNKNAQANKS--NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNN 203          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.087e-29
Identity = 79/205 (38.54%), Postives = 110/205 (53.66%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            +F R TE+A +V+  AQEEA RL H+ +                AAKVL S  I       EVEK+IG G   +   + +TPRAK+V+ELS++EAR+L HN++G+             VAARV  NL  + +  R QV++                   N  PTL+    +LT +A++G LDPVVGR  +I RV+++L RRTKNN
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLVSFNITEDKVIEEVEKLIGHGQEQMGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGSPEMSNKNAQANKS--NNTPTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNN 203          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.087e-29
Identity = 79/205 (38.54%), Postives = 110/205 (53.66%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            +F R TE+A +V+  AQEEA RL H+ +                AAKVL S  I       EVEK+IG G   +   + +TPRAK+V+ELS++EAR+L HN++G+             VAARV  NL  + +  R QV++                   N  PTL+    +LT +A++G LDPVVGR  +I RV+++L RRTKNN
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLVSFNITEDKVIEEVEKLIGHGQEQMGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGSPEMSNKNAQANKS--NNTPTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNN 203          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_CHLPN (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 76/227 (33.48%), Postives = 109/227 (48.02%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIP-FTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVI---------------------RMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            MFE+FT +A +VI LA++EA+RL HN++                A  VL+++GI+   AR EVE++IG G        P  T R K+  E + EEA  L HNY+G+             VA +VLENL  DP  +R +++                     R                    K+  L+ YG +LT++  E KLDPV+GR  ++ER++ IL RR KNN
Sbjct:    1 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRNLGIDFDTARQEVERLIGYGPEIQVYGDPALTGRVKKSFESANEEASLLEHNYVGTEHLLLGILHQSDSVALQVLENLHIDPREVRKEILKELETFNLQLPPSSSSSSSSSRSNPSSSKSPLGHSLGSDKNEKLSALKAYGYDLTEMVRESKLDPVIGRSSEVERLILILCRRRKNN 227          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_CHLTR (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia trachomatis GN=clpC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 73/229 (31.88%), Postives = 110/229 (48.03%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIP-FTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIR-----------------------MXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            MFE+FT +A +VI LA++EA+RL HN++                A  VL+++G++   A+ EVE++IG G        P  T R K+  E + EEA  L HNY+G+             VA +VLENL  DP  IR ++++                                           K+  L+ YG +LT++ +E +LDPV+GR  ++ER++ IL RR KNN
Sbjct:    1 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRTLGVDFDTAKHEVERLIGYGPEIQVCGDPALTGRVKKSFESANEEAALLEHNYVGTEHLLLGILNQSDGVALQVLENLHVDPKEIRKEILKELETFNLQLPPSSSITPRNTNSSSSSKSSSPLGGHTLGGDKPEKLSALKAYGYDLTEMFKESRLDPVIGRSAEVERLILILCRRRKNN 229          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_CHLMU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia muridarum GN=clpC PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 73/230 (31.74%), Postives = 110/230 (47.83%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIP-FTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIR------------------------MXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            MFE+FT +A +VI LA++EA+RL HN++                A  VL+++G++   A+ EVE++IG G        P  T R K+  E + EEA  L HNY+G+             VA +VLENL  DP  IR ++++                                            K+  L+ YG +LT++ +E +LDPV+GR  ++ER++ IL RR KNN
Sbjct:   17 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRTLGVDFDTAKNEVERLIGYGPEIQVYGDPALTGRVKKSFESANEEASILEHNYVGTEHLLLGILNQADGVALQVLENLHIDPKEIRKEILKELETFNLQLPPSSSITPRNTNSSSSSSSKSSSLGGHSLGGDKPEKLSALKAYGYDLTEMFKEARLDPVIGRSAEVERLILILCRRRKNN 246          
The following BLAST results are available for this feature:
BLAST of CF417744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
CLPC_STAAB2.138e-3038.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA82.138e-3038.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA32.138e-3038.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAHJ1.386e-2938.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAS12.364e-2937.56ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAES3.087e-2938.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAEQ3.087e-2938.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CHLPN1.434e-2633.48Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_CHLTR2.705e-2531.88Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_CHLMU6.025e-2531.74Probable ATP-dependent Clp protease ATP-binding su... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-674 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417744 ID=CF417744; Name=CF417744; organism=Citrus sinensis; type=EST; length=699bp
TGTGATTTCCATTCCACGGTGGCTGTTTCACTCTCTTCTAGACGAGGAAA
GTCTGGAAGAGCTGGTGGATTTGTTGTTAAAGCCATGTTTGAGCGCTTCA
CAGAGAAAGCAATTAAAGTGATTATGCTTGCCCAAGAGGAAGCAAGACGG
CTTGGCCACAATTTTGTTGGCACGGAGCAAATTCTATTGGGTCTTATTGG
TGAAGGCACTGGCATTGCTGCTAAGGTTCTTAAATCAATGGGAATCAATC
TTAAAGATGCACGTGTAGAAGTGGAGAAGATAATTGGAAGGGGAAGTGGT
TTTGTTGCTGTGGAAATTCCGTTCACTCCTCGTGCAAAGCGTGTCTTGGA
GCTTTCTCTGGAGGAAGCCCGCCAGCTGGGCCATAATTATATTGGGTCCG
AGCATCTTCTCCTTGGGCTTCTTCGTGAAGGGGAAGGTGTAGCAGCCCGT
GTTCTTGAGAATTTAGGTGCTGACCCTAGTAACATCCGCACACAGGTTAT
TCGTATGGTTGGTGAGAGCACAGAAGCTGTTGGCGCTGGTGTTGGAGGAG
GAAGCAGTGGCAACAAGATGCCAACACTGGAGGAGTATGGAACAAATTTG
ACTAAGCTAGCAGAGGAGGGAAAATTGGATCCTGTTGTTGGGAGACAGCC
ACAAATAGAGCGTGTTGTCCAAATTTTGGGCCGTCGAACTAAGAATAAT
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