CF417744
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAAB (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpC PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30 Identity = 79/205 (38.54%), Postives = 111/205 (54.15%), Query Frame = 1 Query: 85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 +F R TE+A +V+ AQEEA RL H+ + AAKVL+S I EVEK+IG G V + +TPRAK+V+ELS++EAR+L HN++G+ VAARV NL + + R QV++ N PTL+ +LT +A++G LDPV+GR +I RV+++L RRTKNN Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGNPEMSNKNAQASKS--NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNN 203
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30 Identity = 79/205 (38.54%), Postives = 111/205 (54.15%), Query Frame = 1 Query: 85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 +F R TE+A +V+ AQEEA RL H+ + AAKVL+S I EVEK+IG G V + +TPRAK+V+ELS++EAR+L HN++G+ VAARV NL + + R QV++ N PTL+ +LT +A++G LDPV+GR +I RV+++L RRTKNN Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGNPEMSNKNAQASKS--NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNN 203
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAA3 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30 Identity = 79/205 (38.54%), Postives = 111/205 (54.15%), Query Frame = 1 Query: 85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 +F R TE+A +V+ AQEEA RL H+ + AAKVL+S I EVEK+IG G V + +TPRAK+V+ELS++EAR+L HN++G+ VAARV NL + + R QV++ N PTL+ +LT +A++G LDPV+GR +I RV+++L RRTKNN Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGNPEMSNKNAQASKS--NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNN 203
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.386e-29 Identity = 79/205 (38.54%), Postives = 110/205 (53.66%), Query Frame = 1 Query: 85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 +F R TE+A +V+ AQEEA RL H+ + AAKVL+S I EVEK+IG G + +TPRAK+V+ELS++EAR+L HN++G+ VAARV NL + + R QV++ N PTL+ +LT +A++G LDPVVGR +I RV+++L RRTKNN Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDQTGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGSPEMSNKNATANKS--NNTPTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNN 203
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.364e-29 Identity = 77/205 (37.56%), Postives = 112/205 (54.63%), Query Frame = 1 Query: 85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 +F R TE+A +V+ AQEEA RL H+ + AAKVL++ I + EVEK+IG G + + +TPRAK+V+ELS++EAR+L HN++G+ VAARV NL + + R QV++ N PTL+ +LT +A++G LDPV+GR +I RV+++L RRTKNN Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLETFEITEEKVVEEVEKLIGHGQEQMGA-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGSPEMSNKNAQANKS--NNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNN 203
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.087e-29 Identity = 79/205 (38.54%), Postives = 110/205 (53.66%), Query Frame = 1 Query: 85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 +F R TE+A +V+ AQEEA RL H+ + AAKVL S I EVEK+IG G + + +TPRAK+V+ELS++EAR+L HN++G+ VAARV NL + + R QV++ N PTL+ +LT +A++G LDPVVGR +I RV+++L RRTKNN Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLVSFNITEDKVIEEVEKLIGHGQEQMGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGSPEMSNKNAQANKS--NNTPTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNN 203
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.087e-29 Identity = 79/205 (38.54%), Postives = 110/205 (53.66%), Query Frame = 1 Query: 85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 +F R TE+A +V+ AQEEA RL H+ + AAKVL S I EVEK+IG G + + +TPRAK+V+ELS++EAR+L HN++G+ VAARV NL + + R QV++ N PTL+ +LT +A++G LDPVVGR +I RV+++L RRTKNN Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLVSFNITEDKVIEEVEKLIGHGQEQMGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGSPEMSNKNAQANKS--NNTPTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNN 203
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_CHLPN (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26 Identity = 76/227 (33.48%), Postives = 109/227 (48.02%), Query Frame = 1 Query: 85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIP-FTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVI---------------------RMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 MFE+FT +A +VI LA++EA+RL HN++ A VL+++GI+ AR EVE++IG G P T R K+ E + EEA L HNY+G+ VA +VLENL DP +R +++ R K+ L+ YG +LT++ E KLDPV+GR ++ER++ IL RR KNN Sbjct: 1 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRNLGIDFDTARQEVERLIGYGPEIQVYGDPALTGRVKKSFESANEEASLLEHNYVGTEHLLLGILHQSDSVALQVLENLHIDPREVRKEILKELETFNLQLPPSSSSSSSSSRSNPSSSKSPLGHSLGSDKNEKLSALKAYGYDLTEMVRESKLDPVIGRSSEVERLILILCRRRKNN 227
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_CHLTR (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia trachomatis GN=clpC PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25 Identity = 73/229 (31.88%), Postives = 110/229 (48.03%), Query Frame = 1 Query: 85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIP-FTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIR-----------------------MXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 MFE+FT +A +VI LA++EA+RL HN++ A VL+++G++ A+ EVE++IG G P T R K+ E + EEA L HNY+G+ VA +VLENL DP IR ++++ K+ L+ YG +LT++ +E +LDPV+GR ++ER++ IL RR KNN Sbjct: 1 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRTLGVDFDTAKHEVERLIGYGPEIQVCGDPALTGRVKKSFESANEEAALLEHNYVGTEHLLLGILNQSDGVALQVLENLHVDPKEIRKEILKELETFNLQLPPSSSITPRNTNSSSSSKSSSPLGGHTLGGDKPEKLSALKAYGYDLTEMFKESRLDPVIGRSAEVERLILILCRRRKNN 229
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_CHLMU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia muridarum GN=clpC PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25 Identity = 73/230 (31.74%), Postives = 110/230 (47.83%), Query Frame = 1 Query: 85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIP-FTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIR------------------------MXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 MFE+FT +A +VI LA++EA+RL HN++ A VL+++G++ A+ EVE++IG G P T R K+ E + EEA L HNY+G+ VA +VLENL DP IR ++++ K+ L+ YG +LT++ +E +LDPV+GR ++ER++ IL RR KNN Sbjct: 17 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRTLGVDFDTAKNEVERLIGYGPEIQVYGDPALTGRVKKSFESANEEASILEHNYVGTEHLLLGILNQADGVALQVLENLHIDPKEIRKEILKELETFNLQLPPSSSITPRNTNSSSSSSSKSSSLGGHSLGGDKPEKLSALKAYGYDLTEMFKEARLDPVIGRSAEVERLILILCRRRKNN 246 The following BLAST results are available for this feature:
BLAST of CF417744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 37
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417744 ID=CF417744; Name=CF417744; organism=Citrus sinensis; type=EST; length=699bpback to top |