CF417744

Overview
NameCF417744
Unique NameCF417744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5239 contig Csv1_Contig5239:296..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: HLYB_TREHY (Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.143e-22
Identity = 72/212 (33.96%), Postives = 108/212 (50.94%), Query Frame = 1
Query:   85 MFE-RFTEKAIKVIML-AQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGF-VAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXN----KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            MF+   T KA KVI L AQEEA+RL H+ V                A +VL  + I+L   ++E+E  + + S   V   +P  PR ++++  S EEAR L HNYIG+              A  VL ++G + + +R ++++M                  N    K PTL+++  +LTK+A +  LD V+GR+ ++ RVVQIL RR KNN
Sbjct:    1 MFQFHLTSKAKKVIELYAQEEAKRLNHDMVTPEHILLGLLYESEALATRVLMRLKIDLDRLKLELESAMVKSSTTKVFGTLPTAPRVQKLISRSAEEARALSHNYIGTEHLLLGLLREESGTAYNVLTSMGLELTILRQEILKMLGVAGSNISSMEQTSQEDNVKKVKTPTLDQFARDLTKMARDKALDRVIGRENEVMRVVQILSRRKKNN 212          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPB_COREF (Chaperone protein clpB OS=Corynebacterium efficiens GN=clpB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 61/205 (29.76%), Postives = 88/205 (42.93%), Query Frame = 1
Query:  100 TEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIG---RGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRT--QVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            T K  + +  A ++A   G+  +                AA VL + G++ K    E +K++    + SG       F   A   L  S E A +LG  Y+ +              AA +L+  GA    I+   Q +R                    +   LE+Y T+LTKLA EGK+DPV+GR  +I RVVQ+L RRTKNN
Sbjct:    7 TTKTSEAMQAALQQASANGNPDIRPAHLLVAILDQADGVAAPVLTAAGVDPKTILAEAQKLVDGYPKASGSNLANPNFNRDALNALTASQELAGELGDEYVSTEVLLAGIARGKSD-AADLLKGKGATYDAIKAAFQSVR--------GSQKVTSQDPEGQFQALEKYSTDLTKLAREGKIDPVIGRDQEIRRVVQVLSRRTKNN 202          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPB_CORGL (Chaperone protein clpB OS=Corynebacterium glutamicum GN=clpB PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 58/203 (28.57%), Postives = 86/203 (42.36%), Query Frame = 1
Query:  100 TEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIG---RGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            T K  + +  A ++A   G+  +                AA VL + G++ K+   E +K++    + SG       F   A      + E A +LG  Y+ +              AA +L N GA    I+     +                   +   LE+Y T+LTKLA EGK+DPV+GR  +I RVVQ+L RRTKNN
Sbjct:    7 TTKTNEAMQAALQQASSAGNPDIRPAHLLAAILEQTDGVAAPVLMATGVDPKEILAEAKKLVASYPKASGANMANPNFNRDALNAFTAAQELAGELGDEYVSTEVLLAGIARGKSD-AADLLTNKGATYDAIKEAFPSVRGSQRVTTQDPE------GQFQALEKYSTDLTKLAREGKIDPVIGRDQEIRRVVQVLSRRTKNN 202          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPB_BRAJA (Chaperone protein clpB OS=Bradyrhizobium japonicum GN=clpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 54/210 (25.71%), Postives = 85/210 (40.48%), Query Frame = 1
Query:   91 ERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLK-------DARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            E++TE++   I  AQ  A R GH                   AA ++   G N +       DA  +V K+ G G+G    +I   P   R  + + +   + G +++                A  +L   G  P N+   +  +                  N    L++Y  +LT+ A +GKLDPV+GR  +I R +Q+L RRTKNN
Sbjct:    4 EKYTERSRGFIQSAQSLAVREGHQQFSTLHVLKVLLDDNEGLAAGLIDRAGGNSRAILKATEDALNKVPKVSGGGAG----QIYLAPELARTFDAAEKAGEKAGDSFVTVERLLLGLTLEKTSEAGTILSKGGVTPQNLNAAIEALRKGRTADSATAE------NAYDALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNN 203          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPB_RHOPA (Chaperone protein clpB OS=Rhodopseudomonas palustris GN=clpB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 51/206 (24.76%), Postives = 83/206 (40.29%), Query Frame = 1
Query:   91 ERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRG---SGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            E++TE+    I  AQ  A R GH                   A  ++   G N +      E+ +G+    SG  A ++   P   R  + + + A + G +++                A ++L   G  P N+   +  +                  N    L++Y  +LT+ A +GKLDPV+GR  +I R +Q+L RRTKNN
Sbjct:    4 EKYTERVRGFIQSAQSLAMREGHQQFSPLHILKVLLDDSEGLAGGLIDRAGGNSRAILKATEEALGKMPKVSGSGAGQVYLAPATARAFDAAEKAAEKAGDSFVTVERLLLALSLDKDSEAGQLLTKGGVTPQNLNAAINALRKGRTADSATAE------NAYDALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNN 203          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: HSP78_YEAST (Heat shock protein 78, mitochondrial OS=Saccharomyces cerevisiae GN=HSP78 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1
Query:  571 PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            P LE++GTNLTKLA +GKLDPV+GR  +I R +QIL RRTKNN
Sbjct:   96 PALEQFGTNLTKLARDGKLDPVIGRDEEIARAIQILSRRTKNN 138          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNY3 (Chaperone protein clpB 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 51/202 (25.25%), Postives = 85/202 (42.08%), Query Frame = 1
Query:   94 RFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            +FTE+A   I+ +QE ARR  +  +                AA++ +   ++ +  R ++E    R      VE  +  R+  V+    + AR    +   S             V  + L     DP ++   +  +                   K   L++YG +LT+ A +GKLDPV+GR  +I RV+Q+L RR+KNN
Sbjct:    8 KFTEQAWDAIVKSQEVARRYKNTNLEVEHILLALLEQDMGLAARIFQRAAVDGEGLRQQLEIFTNRQPKQAYVEQLYLGRSLDVMLDRADAARSSWEDKFISVEHLLVGFAEDDRVGRKTLRAFNLDPQDLELAIKAIRGSQKVTEPNQE------EKYEALDKYGRDLTEQARQGKLDPVIGRDEEIRRVIQVLSRRSKNN 203          
The following BLAST results are available for this feature:
BLAST of CF417744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
HLYB_TREHY2.143e-2233.96Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE... [more]
CLPB_COREF9.024e-1329.76Chaperone protein clpB OS=Corynebacterium efficien... [more]
CLPB_CORGL1.539e-1228.57Chaperone protein clpB OS=Corynebacterium glutamic... [more]
CLPB_BRAJA9.977e-1225.71Chaperone protein clpB OS=Bradyrhizobium japonicum... [more]
CLPB_RHOPA2.903e-1124.76Chaperone protein clpB OS=Rhodopseudomonas palustr... [more]
HSP78_YEAST4.952e-1169.77Heat shock protein 78, mitochondrial OS=Saccharomy... [more]
CLPB1_SYNY38.446e-1125.25Chaperone protein clpB 1 OS=Synechocystis sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-674 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417744 ID=CF417744; Name=CF417744; organism=Citrus sinensis; type=EST; length=699bp
TGTGATTTCCATTCCACGGTGGCTGTTTCACTCTCTTCTAGACGAGGAAA
GTCTGGAAGAGCTGGTGGATTTGTTGTTAAAGCCATGTTTGAGCGCTTCA
CAGAGAAAGCAATTAAAGTGATTATGCTTGCCCAAGAGGAAGCAAGACGG
CTTGGCCACAATTTTGTTGGCACGGAGCAAATTCTATTGGGTCTTATTGG
TGAAGGCACTGGCATTGCTGCTAAGGTTCTTAAATCAATGGGAATCAATC
TTAAAGATGCACGTGTAGAAGTGGAGAAGATAATTGGAAGGGGAAGTGGT
TTTGTTGCTGTGGAAATTCCGTTCACTCCTCGTGCAAAGCGTGTCTTGGA
GCTTTCTCTGGAGGAAGCCCGCCAGCTGGGCCATAATTATATTGGGTCCG
AGCATCTTCTCCTTGGGCTTCTTCGTGAAGGGGAAGGTGTAGCAGCCCGT
GTTCTTGAGAATTTAGGTGCTGACCCTAGTAACATCCGCACACAGGTTAT
TCGTATGGTTGGTGAGAGCACAGAAGCTGTTGGCGCTGGTGTTGGAGGAG
GAAGCAGTGGCAACAAGATGCCAACACTGGAGGAGTATGGAACAAATTTG
ACTAAGCTAGCAGAGGAGGGAAAATTGGATCCTGTTGTTGGGAGACAGCC
ACAAATAGAGCGTGTTGTCCAAATTTTGGGCCGTCGAACTAAGAATAAT
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