CF417745

Overview
NameCF417745
Unique NameCF417745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7034 contig Csv1_Contig7034:183..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417745 vs. ExPASy Swiss-Prot
Match: CYSP_PLAFA (Trophozoite cysteine proteinase OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.964e-14
Identity = 63/248 (25.40%), Postives = 105/248 (42.34%), Query Frame = 1
Query:   52 QSEDHLLNAEHHFSLFK--SKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH--GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPI---LPTNDLPTDF-------------------DWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSD 717
            + ED + N ++    FK   + +K Y   +E   +F +FK N    K    L+  A++   V +FSD +  E +  F  L        +    P    L  N L ++F                   D+R+ G V   KDQG CGSCW+F++ G +E         ++S SEQ++VDC  +         + GC+GG    +F Y+L+   +    +Y Y   D   C   + K   ++S+   +  +
Sbjct:  211 KKEDPINNIKYASKFFKFMKEHNKVYKNIDEQMRKFEIFKINYISIKNHNKLNKNAMYKKKVNQFSDYSEEELKEYFKTLLHVPNHMIEKYSKPFENHLKDNILISEFYTNGKRNEKDIFSKVPEILDYREKGIVHEPKDQGLCGSCWAFASVGNIESVFAKKNKNILSFSEQEVVDCSKD---------NFGCDGGHPFYSFLYVLQ-NELCLGDEYKYKAKDDMFCLNYRCKRKVSLSSIGAVKEN 448          
BLAST of CF417745 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVS (Cysteine proteinase OS=Plasmodium vivax (strain Salvador I) PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.467e-14
Identity = 56/212 (26.42%), Postives = 95/212 (44.81%), Query Frame = 1
Query:   88 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTN---------------------DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGE-LVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSC 657
            F  F +K+ ++Y    E   +++ FK N  + K+    +      V +FSD +  +F   F  L   + +P   +K  ++P +                     D+P   D+R+ G V   KDQG CGSCW+F++ G +E  +     + +++LSEQ++VDC            + GC+GG    +F Y ++  G+    DY Y   D   C
Sbjct:  237 FFNFMNKYKRSYKDINEQMEKYKNFKMNYLKIKKHNETNQMYKMKVNQFSDYSKKDFESYFRKL---VPIPDHLKKKYVVPFSSMNNGKGKNVVTSSSGANLLADVPEILDYREKGIVHEPKDQGLCGSCWAFASVGNVECMYAKEHNKTILTLSEQEVVDC---------SKLNFGCDGGHPFYSFIYAIE-NGICMGDDYKYKAMDNLFC 435          
BLAST of CF417745 vs. ExPASy Swiss-Prot
Match: CATL3_PARTE (Putative cathepsin L 3 OS=Paramecium tetraurelia GN=GSPATT00022199001 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 58/192 (30.21%), Postives = 92/192 (47.92%), Query Frame = 1
Query:   88 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRR-QLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCK 660
            F  +  K +K Y T+ E  YR  ++ +N R  +   Q  D T   G  +F  L+  EF   +L  +    +       P +    L    DWR++   T VK+QG C S W+FS + +LE  + +   + ++ S QQ+VDCD+          ++GC+GG    A EY+L+ G V    +YPY   +  +CK
Sbjct:   29 FERWALKNNKFY-TESEKLYRMEIYNSNKRMIEEHNQREDVTYQMGENQFMTLSHEEFVDLYLQKSDS-SVNIMGASLPEVQLEGLGA-VDWRNY---TTVKEQGQCASGWAFSVSNSLEAWYAIRGFQKINASTQQIVDCDYN---------NTGCSGGYNAYAMEYVLRVGLVS-STNYPYVAKN-QTCK 203          
BLAST of CF417745 vs. ExPASy Swiss-Prot
Match: GMSA_DICDI (Gamete and mating-type specific protein A OS=Dictyostelium discoideum GN=gmsA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 42/124 (33.87%), Postives = 56/124 (45.16%), Query Frame = 1
Query:  298 PADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTG----ELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSC 657
            P     AP  P        DW  +   T ++DQG CGSCW+F+++ ALE  + +  G      + LS Q  V+C             SGCNGG   + F +  K  G+  EKD PY    G SC
Sbjct:  226 PKPTTPAPTTPAPTSTLTVDWTSYQ--TPIRDQGQCGSCWAFASSAALESRYLIKYGTAQKSTLQLSNQNAVNC-----------IASGCNGGWSGNYFNF-FKTPGIAYEKDDPYKAVTGTSC 335          
The following BLAST results are available for this feature:
BLAST of CF417745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
CYSP_PLAFA4.964e-1425.40Trophozoite cysteine proteinase OS=Plasmodium falc... [more]
CYSP_PLAVS8.467e-1426.42Cysteine proteinase OS=Plasmodium vivax (strain Sa... [more]
CATL3_PARTE2.724e-1230.21Putative cathepsin L 3 OS=Paramecium tetraurelia G... [more]
GMSA_DICDI6.068e-1233.87Gamete and mating-type specific protein A OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-675 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417745 ID=CF417745; Name=CF417745; organism=Citrus sinensis; type=EST; length=717bp
GTCAACGACGACGATGCTATGATCAGACAGGTCGTGCCGTCAGACGGCGA
ACAATCCGAAGATCATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCA
AGTCCAAATTCTCCAAGACTTACGCCACCCAGGAGGAGCACGATTACCGA
TTCCGCGTGTTCAAGGCTAATCTGCGCCGAGCAAAGCGACGCCAGCTCCT
GGACCCCACTGCTGTCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGT
CTGAATTCCGCCGTCAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTGCCA
GCTGACGCTCAAAAGGCTCCTATTCTCCCCACCAACGATCTTCCTACTGA
CTTTGACTGGCGTGATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCG
CATGTGGATCGTGCTGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCG
CACTTCTTATCGACGGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGT
GGACTGTGATCACGAGTGTGATCCAGAGGAATCTGGTTCATGTGACTCTG
GGTGCAATGGTGGGCTAATGAACTCTGCCTTTGAGTACATACTCAAGGCT
GGTGGGGTTGAGCGAGAGAAGGACTACCCTTACACTGGGACCGACGGTGG
TTCCTGCAAATTTGACAAAAGCAAAATTGCTGCAGCTGTATCTAATTTCA
GTGTTATTTCCTCTGAT
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