CF417750

Overview
NameCF417750
Unique NameCF417750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417750_ssr30 microsatellite CF417750_ssr30:30..39. BLAST: Citrus ESTs to Prunus persica proteins V1
CF417750_ssr194 microsatellite CF417750_ssr194:194..205. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:412..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 4.577e-43
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            S ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   41 STETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 132
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B10_ARATH (Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 4.577e-43
Identity = 89/103 (86.41%), Postives = 94/103 (91.26%), Query Frame = 2 
Query:  185 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            +GD        ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   43 AGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B8_ARATH (Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 5.977e-43
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            +IETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGEL+KHAVSEGTKAVTKFTSS
Sbjct:   47 NIETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELSKHAVSEGTKAVTKFTSS 138
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 5.977e-43
Identity = 89/103 (86.41%), Postives = 93/103 (90.29%), Query Frame = 2 
Query:  185 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            +G+        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QE+SRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct:   46 AGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSJ (Histone H2B.11 OS=Oryza sativa subsp. japonica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.977e-43
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   48 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSI (Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.977e-43
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   48 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B2_SOLLC (Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 7.807e-43
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            SIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B4_ARATH (Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.332e-42
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 490
            S+ETYKIYIFKVLKQVHPD+GIS KAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   48 SVETYKIYIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 138
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSJ (Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H2B1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.332e-42
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSI (Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI_010709 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.332e-42
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152
The following BLAST results are available for this feature:
BLAST of CF417750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B9_ARATH4.577e-4396.74Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570... [more]
H2B10_ARATH4.577e-4386.41Histone H2B.10 OS=Arabidopsis thaliana GN=At5g2288... [more]
H2B8_ARATH5.977e-4395.65Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650... [more]
H2B2_MEDTR5.977e-4386.41Probable histone H2B.2 OS=Medicago truncatula PE=3... [more]
H2B11_ORYSJ5.977e-4395.65Histone H2B.11 OS=Oryza sativa subsp. japonica GN=... [more]
H2B11_ORYSI5.977e-4395.65Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B2_SOLLC7.807e-4396.74Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=... [more]
H2B4_ARATH1.332e-4294.51Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470... [more]
H2B1_ORYSJ1.332e-4294.57Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B1_ORYSI1.332e-4294.57Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-680 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417750 ID=CF417750; Name=CF417750; organism=Citrus sinensis; type=EST; length=590bp
GAAAAGAAAATATCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGA
AATTAATGGCACCAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCG
GAGGAGAAGAAGACATCGGTGGCCGAGAAGGCGCCGGCGGAGAAGAAGCC
GAAGGCCGGCAAGAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGA
AGAAGCGCGCGAAGAAGAGCATCGAGACGTACAAGATTTACATCTTCAAA
GTCCTGAAGCAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGG
AATCATGAACAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAG
CTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAA
ATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGC
TGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGA
AGTTTGTTGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTT
AGTAGTTTAGGCCTTTAATTTTACTAGATGAAGTCGTTTT
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