CF417750

Overview
NameCF417750
Unique NameCF417750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417750_ssr30 microsatellite CF417750_ssr30:30..39. BLAST: Citrus ESTs to Prunus persica proteins V1
CF417750_ssr194 microsatellite CF417750_ssr194:194..205. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:412..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSJ (Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.631e-42
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSI (Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.631e-42
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B1_WHEAT (Histone H2B.1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 8.631e-42
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 152
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B9_ORYSJ (Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H2B.9 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.472e-41
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 152
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B9_ORYSI (Histone H2B.9 OS=Oryza sativa subsp. indica GN=H2B.9 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.472e-41
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 152
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B5_ORYSJ (Histone H2B.5 OS=Oryza sativa subsp. japonica GN=H2B.5 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.472e-41
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   64 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 155
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B5_ORYSI (Histone H2B.5 OS=Oryza sativa subsp. indica GN=H2B.5 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.472e-41
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   64 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 155
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B1_MAIZE (Histone H2B.1 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.472e-41
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   60 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 151
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B3_MAIZE (Histone H2B.3 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 1.923e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPT+TSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTVTSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B5_ARATH (Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480 PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 3.280e-41
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 2 
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            S ETYKIY+FKVLKQVHPDIGIS KAMGIMNSFIND FEK+A E+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   35 STETYKIYLFKVLKQVHPDIGISGKAMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 126
The following BLAST results are available for this feature:
BLAST of CF417750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B2_ORYSJ8.631e-4293.48Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B2_ORYSI8.631e-4293.48Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B1_WHEAT8.631e-4293.48Histone H2B.1 OS=Triticum aestivum PE=1 SV=3[more]
H2B9_ORYSJ1.472e-4192.39Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B9_ORYSI1.472e-4192.39Histone H2B.9 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B5_ORYSJ1.472e-4192.39Histone H2B.5 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B5_ORYSI1.472e-4192.39Histone H2B.5 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B1_MAIZE1.472e-4192.39Histone H2B.1 OS=Zea mays PE=2 SV=3[more]
H2B3_MAIZE1.923e-4191.30Histone H2B.3 OS=Zea mays PE=3 SV=3[more]
H2B5_ARATH3.280e-4192.39Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-680 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417750 ID=CF417750; Name=CF417750; organism=Citrus sinensis; type=EST; length=590bp
GAAAAGAAAATATCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGA
AATTAATGGCACCAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCG
GAGGAGAAGAAGACATCGGTGGCCGAGAAGGCGCCGGCGGAGAAGAAGCC
GAAGGCCGGCAAGAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGA
AGAAGCGCGCGAAGAAGAGCATCGAGACGTACAAGATTTACATCTTCAAA
GTCCTGAAGCAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGG
AATCATGAACAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAG
CTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAA
ATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGC
TGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGA
AGTTTGTTGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTT
AGTAGTTTAGGCCTTTAATTTTACTAGATGAAGTCGTTTT
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