CF417750

Overview
NameCF417750
Unique NameCF417750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417750_ssr30 microsatellite CF417750_ssr30:30..39. BLAST: Citrus ESTs to Prunus persica proteins V1
CF417750_ssr194 microsatellite CF417750_ssr194:194..205. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:412..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B3A_MOUSE (Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.684e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B1P_MOUSE (Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.684e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B1L_HUMAN (Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.684e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B1F_MOUSE (Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h2bf PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.684e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B1B_MOUSE (Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.684e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B8_CHICK (Histone H2B 8 OS=Gallus gallus GN=H2B-VIII PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 2.200e-37
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B5_CHICK (Histone H2B 5 OS=Gallus gallus GN=H2B-V PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.200e-37
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B2E_PONAB (Histone H2B type 2-E OS=Pongo abelii GN=HIST2H2BE PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 2.200e-37
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B2E_HUMAN (Histone H2B type 2-E OS=Homo sapiens GN=HIST2H2BE PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 2.200e-37
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B1_CHICK (Histone H2B 1/2/3/4/6 OS=Gallus gallus GN=H2B-I PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.200e-37
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of CF417750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B3A_MOUSE1.684e-3783.33Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba ... [more]
H2B1P_MOUSE1.684e-3783.33Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp ... [more]
H2B1L_HUMAN1.684e-3783.33Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL ... [more]
H2B1F_MOUSE1.684e-3783.33Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h... [more]
H2B1B_MOUSE1.684e-3783.33Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb ... [more]
H2B8_CHICK2.200e-3784.44Histone H2B 8 OS=Gallus gallus GN=H2B-VIII PE=1 SV... [more]
H2B5_CHICK2.200e-3784.44Histone H2B 5 OS=Gallus gallus GN=H2B-V PE=1 SV=2[more]
H2B2E_PONAB2.200e-3784.44Histone H2B type 2-E OS=Pongo abelii GN=HIST2H2BE ... [more]
H2B2E_HUMAN2.200e-3784.44Histone H2B type 2-E OS=Homo sapiens GN=HIST2H2BE ... [more]
H2B1_CHICK2.200e-3784.44Histone H2B 1/2/3/4/6 OS=Gallus gallus GN=H2B-I PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-680 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417750 ID=CF417750; Name=CF417750; organism=Citrus sinensis; type=EST; length=590bp
GAAAAGAAAATATCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGA
AATTAATGGCACCAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCG
GAGGAGAAGAAGACATCGGTGGCCGAGAAGGCGCCGGCGGAGAAGAAGCC
GAAGGCCGGCAAGAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGA
AGAAGCGCGCGAAGAAGAGCATCGAGACGTACAAGATTTACATCTTCAAA
GTCCTGAAGCAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGG
AATCATGAACAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAG
CTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAA
ATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGC
TGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGA
AGTTTGTTGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTT
AGTAGTTTAGGCCTTTAATTTTACTAGATGAAGTCGTTTT
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