CF417750

Overview
NameCF417750
Unique NameCF417750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417750_ssr30 microsatellite CF417750_ssr30:30..39. BLAST: Citrus ESTs to Prunus persica proteins V1
CF417750_ssr194 microsatellite CF417750_ssr194:194..205. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:412..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B_ONCMY (Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 6.401e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B_LITVA (Histone H2B (Fragments) OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 6.401e-37
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   26 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 115
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B3_TIGCA (Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 6.401e-37
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B2E_MOUSE (Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 6.401e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQT+VRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIANEASRLAHYNKRSTITSREIQTSVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B1_TIGCA (Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 6.401e-37
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B1K_HUMAN (Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 6.401e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B1K_BOVIN (Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 6.401e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B_PATGR (Histone H2B, gonadal OS=Patella granatina PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.360e-37
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y IYI+KVLKQVHPD G+SSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   32 ESYSIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 121
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B_DROYA (Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 8.360e-37
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF417750 vs. ExPASy Swiss-Prot
Match: H2B_DROTE (Histone H2B OS=Drosophila teissieri GN=His2B PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 8.360e-37
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  224 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
The following BLAST results are available for this feature:
BLAST of CF417750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_ONCMY6.401e-3783.33Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2B_LITVA6.401e-3784.44Histone H2B (Fragments) OS=Litopenaeus vannamei PE... [more]
H2B3_TIGCA6.401e-3784.44Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2[more]
H2B2E_MOUSE6.401e-3782.22Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be ... [more]
H2B1_TIGCA6.401e-3784.44Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3... [more]
H2B1K_HUMAN6.401e-3782.22Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK ... [more]
H2B1K_BOVIN6.401e-3782.22Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE... [more]
H2B_PATGR8.360e-3783.33Histone H2B, gonadal OS=Patella granatina PE=1 SV=... [more]
H2B_DROYA8.360e-3784.44Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=... [more]
H2B_DROTE8.360e-3784.44Histone H2B OS=Drosophila teissieri GN=His2B PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-680 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417750 ID=CF417750; Name=CF417750; organism=Citrus sinensis; type=EST; length=590bp
GAAAAGAAAATATCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGA
AATTAATGGCACCAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCG
GAGGAGAAGAAGACATCGGTGGCCGAGAAGGCGCCGGCGGAGAAGAAGCC
GAAGGCCGGCAAGAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGA
AGAAGCGCGCGAAGAAGAGCATCGAGACGTACAAGATTTACATCTTCAAA
GTCCTGAAGCAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGG
AATCATGAACAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAG
CTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAA
ATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGC
TGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGA
AGTTTGTTGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTT
AGTAGTTTAGGCCTTTAATTTTACTAGATGAAGTCGTTTT
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