CF417759 | Citrus Genome Database

Overview


Name	CF417759
Unique Name	CF417759
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	674

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417759 vs. ExPASy Swiss-Prot
Match: ALDOA_MOUSE (Fructose-bisphosphate aldolase A OS=Mus musculus GN=Aldoa PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.794e-30
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 2

Query:  209 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPG-LGQYISGAILFEETLYQSTTDGK 439
            EL   A  + +PG+GILA DES  +  KRL SIG ENTE NR+ YR LL+TA   +   I G ILF ETLYQ   DG+
Sbjct:   15 ELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGR 92

HSP 2 Score: 75.8702 bits (185), Expect = 1.794e-30
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 3

Query:  438 RRMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSI-PNGPSALAVREAA 665
            R    V+  +  V GIKVDKG+VPLAG+N E+  QGLDGL+ R A Y + GA FAKWR V+ I  + PSALA+ E A
Sbjct:   92 RPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENA 168

[Close]

BLAST of CF417759 vs. ExPASy Swiss-Prot
Match: ALDOA_HUMAN (Fructose-bisphosphate aldolase A OS=Homo sapiens GN=ALDOA PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.794e-30
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 2

Query:  209 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPG-LGQYISGAILFEETLYQSTTDGK 439
            EL   A  + +PG+GILA DES  +  KRL SIG ENTE NR+ YR LL+TA   +   I G ILF ETLYQ   DG+
Sbjct:   15 ELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGR 92

HSP 2 Score: 75.8702 bits (185), Expect = 1.794e-30
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 3

Query:  438 RRMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSI-PNGPSALAVREAA 665
            R    V+  +  V GIKVDKG+VPLAG+N E+  QGLDGL+ R A Y + GA FAKWR V+ I  + PSALA+ E A
Sbjct:   92 RPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENA 168

[Close]

BLAST of CF417759 vs. ExPASy Swiss-Prot
Match: ALDOA_RAT (Fructose-bisphosphate aldolase A OS=Rattus norvegicus GN=Aldoa PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.335e-30
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 2

Query:  209 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPG-LGQYISGAILFEETLYQSTTDGK 439
            EL   A  + +PG+GILA DES  +  KRL SIG ENTE NR+ YR LL+TA   +   I G ILF ETLYQ   DG+
Sbjct:   15 ELADIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGR 92

HSP 2 Score: 74.7146 bits (182), Expect = 2.335e-30
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 3

Query:  438 RRMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSI-PNGPSALAVREAA 665
            R    V+  +  V GIKVDKG+VPLAG+N E+  QGLDGL+ R A Y + GA FAKWR V+ I  + PS+LA+ E A
Sbjct:   92 RPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSSLAIMENA 168

[Close]

BLAST of CF417759 vs. ExPASy Swiss-Prot
Match: ALDOA_PANTR (Fructose-bisphosphate aldolase A OS=Pan troglodytes GN=ALDOA PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.041e-30
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 2

Query:  209 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPG-LGQYISGAILFEETLYQSTTDGK 439
            EL   A  + +PG+GILA DES  +  KRL SIG ENTE NR+ YR LL+TA   +   I G ILF ETLYQ   DG+
Sbjct:   15 ELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIVGVILFHETLYQKADDGR 92

HSP 2 Score: 75.8702 bits (185), Expect = 3.041e-30
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 3

Query:  438 RRMVDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSI-PNGPSALAVREAA 665
            R    V+  +  V GIKVDKG+VPLAG+N E+  QGLDGL+ R A Y + GA FAKWR V+ I  + PSALA+ E A
Sbjct:   92 RPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENA 168

[Close]

BLAST of CF417759 vs. ExPASy Swiss-Prot
Match: ALDCB_DANRE (Fructose-bisphosphate aldolase C-B OS=Danio rerio GN=aldocb PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.960e-30
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 3

Query:  453 VLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPN-GPSALAVREAA 665
            ++ ++ IV GIKVDKG+VPLAG+N E+  QGLDGL+ R A Y + GA FAKWR+V+ I +  PS LA+ E A
Sbjct:   97 LIKDRGIVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRSVLKISDTTPSELAIMENA 168

HSP 2 Score: 75.485 bits (184), Expect = 3.960e-30
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 2

Query:  209 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTA-PGLGQYISGAILFEETLYQSTTDG 436
            EL   A+ + +PG+GILA DES  +  KRL  IG+ENTE NR+ YR LL +A   + + I G I F ETLYQ+T DG
Sbjct:   15 ELQDIAQRIVAPGKGILAADESTGSMAKRLNPIGVENTEENRRLYRQLLFSADERIDKCIGGVIFFHETLYQNTDDG 91

[Close]

BLAST of CF417759 vs. ExPASy Swiss-Prot
Match: ALDOC_CARAU (Fructose-bisphosphate aldolase C OS=Carassius auratus GN=aldoc PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.156e-30
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 3

Query:  453 VLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSI-PNGPSALAVREAA 665
            ++ ++ IV GIKVDKG+VPLAG+N E+  QGLDGL+ R A Y + GA FAKWR+V+ I    PS LA+ E A
Sbjct:   97 MIKDRGIVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRSVLKISETSPSELAIMENA 168

HSP 2 Score: 74.7146 bits (182), Expect = 5.156e-30
Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = 2

Query:  209 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTA-PGLGQYISGAILFEETLYQSTTDG 436
            EL   A+ + +PG+GILA DES  +  KRL  IG+ENTE NR+ YR LL TA   + + I G I F ETLYQ   DG
Sbjct:   15 ELQDIAQRIVAPGKGILAADESTGSMAKRLNPIGVENTEENRRLYRQLLFTADERMDKCIGGVIFFHETLYQKADDG 91

[Close]

BLAST of CF417759 vs. ExPASy Swiss-Prot
Match: ALDOB_SHEEP (Fructose-bisphosphate aldolase B OS=Ovis aries GN=ALDOB PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.544e-29
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 3

Query:  450 DVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPNG-PSALAVREAA 665
            D+L E+ IV GIK+D+G+ PLAG+N E+  QGLDGL+ R A Y + GA F KWR V+ I N  PS LA++E A
Sbjct:   96 DILKEKGIVVGIKLDQGVAPLAGTNKETTVQGLDGLSERCAQYKKDGADFGKWRAVLKIDNQCPSHLAIQENA 168

HSP 2 Score: 70.4774 bits (171), Expect = 5.544e-29
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 2

Query:  212 LVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTA-PGLGQYISGAILFEETLYQSTTDGK 439
            L +TA+ + + G+GILA DES  T G RL  I +ENTE NR+ +R LL T    + Q I G ILF ETLYQ    GK
Sbjct:   16 LSETARRIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFRELLFTVDSSVSQSIGGVILFHETLYQKDGQGK 92

[Close]

BLAST of CF417759 vs. ExPASy Swiss-Prot
Match: ALDOB_BOVIN (Fructose-bisphosphate aldolase B OS=Bos taurus GN=ALDOB PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.544e-29
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 3

Query:  450 DVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPNG-PSALAVREAA 665
            D+L E+ IV GIK+D+G+ PLAG+N E+  QGLDGL+ R A Y + GA F KWR V+ I N  PS LA++E A
Sbjct:   96 DILKEKGIVVGIKLDQGVAPLAGTNKETTVQGLDGLSERCAQYKKDGADFGKWRAVLKIDNQCPSHLAIQENA 168

HSP 2 Score: 70.4774 bits (171), Expect = 5.544e-29
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 2

Query:  212 LVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTA-PGLGQYISGAILFEETLYQSTTDGK 439
            L +TA+ + + G+GILA DES  T G RL  I +ENTE NR+ +R LL T    + Q I G ILF ETLYQ    GK
Sbjct:   16 LSETARRIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFRELLFTVDSSVSQSIGGVILFHETLYQKDGQGK 92

[Close]

BLAST of CF417759 vs. ExPASy Swiss-Prot
Match: ALF_TRYBB (Fructose-bisphosphate aldolase, glycosomal OS=Trypanosoma brucei brucei GN=ALD PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.592e-28
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 2

Query:  200 YADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPGLGQYISGAILFEETLYQSTTDGK 439
            Y  EL++TAK + +PG+G+LA DES  +C KR A IGL NT  +R+ YR L++   G  QYISG IL +ET+YQ    G+
Sbjct:   22 YEAELIETAKKMTAPGKGLLAADESTGSCSKRFAGIGLSNTAEHRRQYRALMLECEGFEQYISGVILHDETVYQKAKTGE 101

HSP 2 Score: 60.077 bits (144), Expect = 1.592e-28
Identity = 32/67 (47.76%), Postives = 36/67 (53.73%), Query Frame = 3

Query:  456 LVEQNIVPGIKVDKGLVPLA-GSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPNGPSALAV 653
            L  + +VPGIK D GL PL  G+  E    GLDG   R   YY  G RF KWR V  I NG  + AV
Sbjct:  107 LRRRGVVPGIKTDCGLEPLVEGAKGEQMTAGLDGYIKRAKKYYAMGCRFCKWRNVYKIQNGTVSEAV 173

[Close]

BLAST of CF417759 vs. ExPASy Swiss-Prot
Match: ALDOC_PANTR (Fructose-bisphosphate aldolase C OS=Pan troglodytes GN=ALDOC PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 5.958e-28
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 3

Query:  447 VDVLVEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSI-PNGPSALAVREAA 665
            +  ++++ IV GIKVDKG+VPLAG++ E+  QGLDGL+ R A Y + GA FAKWR V+ I    PSALA+ E A
Sbjct:   95 IRTILDKGIVVGIKVDKGVVPLAGTDGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKISERTPSALAILENA 168

HSP 2 Score: 68.5514 bits (166), Expect = 5.958e-28
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 2

Query:  209 ELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPG-LGQYISGAILFEETLYQSTTDG 436
            EL   A  + +PG+GILA DES  +  KRL+ IG+ENTE NR+ YR +L +A   + + I G I F ETLYQ   +G
Sbjct:   15 ELSDIALRIVAPGKGILAADESVGSMAKRLSQIGVENTEENRRLYRQVLFSADDRVKKCIGGVIFFHETLYQKDDNG 91

The following BLAST results are available for this feature:

BLAST of CF417759 vs. ExPASy Swiss-Prot

BLAST of CF417759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56


Match Name	E-value	Identity	Description
ALDOA_MOUSE	1.794e-30	53.85	Fructose-bisphosphate aldolase A OS=Mus musculus G...	[more]
ALDOA_HUMAN	1.794e-30	53.85	Fructose-bisphosphate aldolase A OS=Homo sapiens G...	[more]
ALDOA_RAT	2.335e-30	53.85	Fructose-bisphosphate aldolase A OS=Rattus norvegi...	[more]
ALDOA_PANTR	3.041e-30	53.85	Fructose-bisphosphate aldolase A OS=Pan troglodyte...	[more]
ALDCB_DANRE	3.960e-30	55.56	Fructose-bisphosphate aldolase C-B OS=Danio rerio ...	[more]
ALDOC_CARAU	5.156e-30	55.56	Fructose-bisphosphate aldolase C OS=Carassius aura...	[more]
ALDOB_SHEEP	5.544e-29	54.79	Fructose-bisphosphate aldolase B OS=Ovis aries GN=...	[more]
ALDOB_BOVIN	5.544e-29	54.79	Fructose-bisphosphate aldolase B OS=Bos taurus GN=...	[more]
ALF_TRYBB	1.592e-28	50.00	Fructose-bisphosphate aldolase, glycosomal OS=Tryp...	[more]
ALDOC_PANTR	5.958e-28	54.05	Fructose-bisphosphate aldolase C OS=Pan troglodyte...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-689 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_H03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417759 ID=CF417759; Name=CF417759; organism=Citrus sinensis; type=EST; length=674bp
AAGGCCTCTCGAGCTCAGAACCCACAGCAAGAAGAAGCAAAGAGGTAAAA
TGGCCTCGGCCTCTGCATCTTTACTCAAGTCATCATCCCCCGTTCTTGAC
AAGTCTGAGTGGGTTAAGGGCCAGGCCATCCGCCAGTCTACTGTCTCAGT
CCGCAGCCTCCCCAGTGGCCCCTCTGCCCTCACCATCCGTGCTGGTTCCT
ATGCCGATGAGCTTGTCAAGACCGCGAAAACTGTTGCATCACCAGGACGT
GGAATTTTGGCCATGGATGAGTCAAATGCAACTTGTGGAAAACGCCTTGC
CTCAATTGGGTTAGAGAACACTGAGGCTAACCGCCAGGCATACCGTACCC
TCCTTGTTACAGCCCCTGGTCTTGGACAATACATCTCTGGTGCCATCCTT
TTTGAGGAGACTCTCTACCAATCCACCACCGATGGCAAGAAGAATGGTTG
ATGTTCTTGTTGAGCAAAACATTGTCCCCGGTATCAAAGTCGACAAGGGT
TTGGTGCCCCTCGCTGGTTCCAATGACGAGTCATGGTGCCAGGGTCTTGA
TGGCCTAGCTTCTCGCACTGCTGCTTACTACCAACAGGGAGCTCGTTTTG
CCAAATGGCGTACTGTTGTGAGCATTCCCAATGGCCCATCTGCTTTGGCA
GTCAGGGAAGCCGCCTGGGGTCTT