CF417764

Overview
NameCF417764
Unique NameCF417764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 7.588e-59
Identity = 103/190 (54.21%), Postives = 134/190 (70.53%), Query Frame = 2
Query:   17 NSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIE-GDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 583
            + KV+AE  W+G EQEYT+L +      GWP G +P PQGP+YCG GA+ +FGR +A+AH +AC+ AG+ ISG N EVMPGQWEYQ+GP   +  GD +  SR+LL R+ E  G+V + +PKP+  GDWNG G HTN+STK  R  GG + I++A+  LS  H EHI+ YG GNE RLTGKHET  I++F
Sbjct:  141 DDKVTAEDCWYGFEQEYTMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINAEVMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWNGTGAHTNFSTKGMRVPGGMKVIEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINTF 330          
BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.481e-54
Identity = 96/187 (51.34%), Postives = 127/187 (67.91%), Query Frame = 2
Query:   23 KVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 583
            K   E PW+G+EQEY + +++   P+G     Y   QG YYC  G+  ++GR I+D H +ACLYAGI ISGTN EV PGQ E+Q+GP  GIDA D +W +R++LE+I+E     +   PKP++GDWNG+GCHTN+ST+S R EGG   I +A+  L  +H EH+  YG  N+ RLTG HETASID F
Sbjct:  119 KYQNEKPWYGLEQEYFIFRKDTNQPIGME---YASKQGQYYCSVGSQNAYGRRISDEHMEACLYAGIKISGTNLEVAPGQHEFQIGPVEGIDAADQLWIARFILEKISEHYDRYIVYHPKPLQGDWNGSGCHTNFSTESMRSEGGLTVIMEAVDKLRTKHSEHMKVYGIDNDLRLTGDHETASIDEF 302          
BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.364e-52
Identity = 99/184 (53.80%), Postives = 125/184 (67.93%), Query Frame = 2
Query:   23 KVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHK--EHISAYGEGNERRLTGKHETA 568
            + +A+ P FGIEQEYT  Q    +PLG+P G +P PQG YYCG GAD+ FGRD+ +AH   CL AG+ ISG N EVMPGQWE+QVGP   ++  DH+W +R+LL R  E   V  +LDPKP++GDWNGAG HTN+STK+ RE   Y+ I  A  +L    K  +H+  YG G + RLTG HETA
Sbjct:  102 RFAAQEPIFGIEQEYTFFQDG--YPLGFPKGGFPAPQGGYYCGVGADEIFGRDVVEAHLDNCLKAGLAISGINAEVMPGQWEFQVGPVSPLEVSDHLWVARWLLYRTAEDFDVAATLDPKPVKGDWNGAGAHTNFSTKAMRE--SYDAIITAAESLGEGSKPLDHVKNYGAGIDDRLTGLHETA 281          
BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.408e-50
Identity = 99/190 (52.11%), Postives = 125/190 (65.79%), Query Frame = 2
Query:   23 KVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGA-YPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHK--EHISAYGEGNERRLTGKHETASIDSF 583
            + + + P FGIEQEYT L+ +   PLG+P G  YP PQ  YYCG GAD  FGR+I + H   CL AG+ +SG N EVMPGQWE+QVG    ++  DH+W +R+LL R+ E+ GV  SLD KP +GDWNGAG HTN+ST++ RE  GY+ I  A   L    K  EH+  YG G E RLTG HETA  D++
Sbjct:   98 RFAGQEPIFGIEQEYTFLKGDR--PLGFPEGGGYPAPQADYYCGVGADAIFGREIVEKHLDLCLAAGLGLSGINAEVMPGQWEFQVGALPPLEVSDHMWVARWLLHRVAEEFGVTASLDAKPAKGDWNGAGAHTNFSTRAMRE--GYDPIITACEALGQDDKPLEHVRQYGTGIEDRLTGAHETAPWDAY 283          
BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.450e-49
Identity = 97/176 (55.11%), Postives = 111/176 (63.07%), Query Frame = 2
Query:   41 PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETA 568
            P FGIEQEYT  +     P GWP   YP PQGPYYCG G  K  GR I + H +ACL AG+ I GTN EVM GQWE+Q+G       GD IW  R+LL RI E  GV +S   KPI GDWNGAG HTN+STK T E  G++ I      L  R  EH++ YG+G E RLTGKHETA
Sbjct:  103 PMFGIEQEYTFFKDGR--PYGWPEVGYPAPQGPYYCGVGGSKMPGRQIVERHTQACLDAGLAIEGTNAEVMMGQWEFQIGVLPAPAIGDQIWLGRWLLHRIAEDYGVEVSFAAKPIPGDWNGAGAHTNFSTKQTME--GWDAIVTCCEALGTRVTEHVTHYGKGIEDRLTGKHETA 274          
BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.488e-38
Identity = 84/186 (45.16%), Postives = 107/186 (57.53%), Query Frame = 2
Query:   35 EVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADK--SFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPI-EGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 583
            E  WFG EQEY   Q     PLG+P   YP PQ PYY G G        R+I + H   CL AGIN  G N EV  GQWE+Q+       A D IW +RYLL+R+TE+ G+ +    KP+ + DWNG+G H N+STK  RE GG E  +  + +      +HI+ YG  N++RLTGKHETA  + F
Sbjct:  100 EDAWFGFEQEYFFYQNGR--PLGFPEQGYPAPQ-PYYTGVGYSNVGDVAREIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADQIWMARYLLQRLTEKYGIDIEYHCKPLGDTDWNGSGMHCNFSTKYLREVGGKEYFEALMASSDKNLMDHIAVYGPDNDKRLTGKHETAPWNKF 282          
BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 5.653e-38
Identity = 79/183 (43.17%), Postives = 103/183 (56.28%), Query Frame = 2
Query:   44 WFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADK--SFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPI-EGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 583
            WFG EQEY   +     PLG+P   YP PQGPYY G G        R I + H   CL AGIN  G N EV  GQWE+Q+       A D +W +RYL+ R+TE+ G+ +    KP+ + DWNG+G H N+ST+  R  GG E  +  +        +HI+ YG  N++RLTGKHETA  + F
Sbjct:  105 WFGFEQEYFFYKDGR--PLGFPTSGYPAPQGPYYTGVGFSNVGDVARKIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEMWMARYLMLRLTEKYGIDIEFHCKPLGDTDWNGSGMHANFSTEYMRTVGGKEYFEALMAAFDKNLMDHIAVYGPDNDKRLTGKHETAPWNKF 285          
BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA2_RHIME (Glutamine synthetase 2 OS=Rhizobium meliloti GN=glnII PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.066e-36
Identity = 81/186 (43.55%), Postives = 101/186 (54.30%), Query Frame = 2
Query:   35 EVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADK--SFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPI-EGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 583
            E  WFG EQEY   +     PLG+P   YP PQGPYY G G        R I + H   CL AGIN  G N EV  GQWE+Q+       A D +  +RYLL R+TE+ G+ +    KP+ + DWNG+G H N+ST   RE GG +  +  +        +HI+ YG  N  RLTGKHETA  D F
Sbjct:  102 EGAWFGFEQEYFFYKNGR--PLGFPEQGYPAPQGPYYTGVGYKNVGDVARQIVEEHLDICLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEVCVARYLLVRLTEKYGIDVEFHCKPLGDTDWNGSGMHANFSTAYLREVGGQDYFEALMAAFEKNLHDHINVYGPDNHLRLTGKHETAPWDKF 285          
The following BLAST results are available for this feature:
BLAST of CF417764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_CHLRE7.588e-5954.21Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA_MIMIV1.481e-5451.34Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA2_STRVR2.364e-5253.80Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY8.408e-5052.11Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_FRAAL5.450e-4955.11Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_RHILP1.488e-3845.16Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]
GLNA2_BRAJA5.653e-3843.17Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA2_RHIME1.066e-3643.55Glutamine synthetase 2 OS=Rhizobium meliloti GN=gl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-694 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417764 ID=CF417764; Name=CF417764; organism=Citrus sinensis; type=EST; length=583bp
TGCTGAAATTTTCAGTAACTCGAAAGTGTCTGCTGAAGTTCCATGGTTTG
GGATAGAGCAAGAGTACACCTTACTTCAACAAAATGTGAAATGGCCTCTG
GGTTGGCCTGTTGGAGCCTATCCTGGTCCCCAGGGTCCTTATTACTGTGG
AGCTGGGGCTGATAAGTCGTTTGGCCGTGACATTGCAGATGCTCATTACA
AGGCTTGCTTGTATGCTGGCATTAACATTAGTGGCACCAACGGGGAGGTT
ATGCCTGGCCAGTGGGAATATCAAGTTGGTCCCAGTGTAGGCATTGATGC
TGGAGATCATATATGGTGTTCGAGATACCTTCTTGAGAGAATCACTGAAC
AAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATTGAGGGAGACTGG
AATGGTGCTGGATGCCACACCAATTACAGTACAAAGAGTACGAGAGAGGA
AGGAGGCTATGAAACTATTAAGAAGGCAATCTTGAATCTGTCCCTTCGCC
ATAAAGAACACATCAGTGCTTATGGTGAAGGAAATGAGAGAAGGCTAACA
GGAAAGCATGAAACAGCTAGCATTGACTCATTT
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