CF417768

Overview
NameCF417768
Unique NameCF417768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_SYNS9 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9902) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 2 
Query:  485 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +E+G+R+   +  G+ V+YSKYAG D K
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKPNEDGSRQAPEVGIGDKVLYSKYAGTDIK 84

HSP 2 Score: 88.5817 bits (218), Expect = 3.643e-17
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 2 
Query:  194 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 472
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ GEVV VG GK     ++    V  G +V+YSKYAGT+++     +++L E D++ I+
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKPNEDGSRQAPEVGIGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAIV 102
[Close]
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_SYNPX (10 kDa chaperonin OS=Synechococcus sp. (strain WH8102) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 2 
Query:  485 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +  +KPL DRVFIKV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K
Sbjct:    8 VSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIK 84

HSP 2 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 2 
Query:  194 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 472
            +++KPLGDRV +K+   EEKT GGI LP TA+ KPQ GEVV VG GK     ++    V  G +V+YSKYAGT+++  G   ++L E D++ I+
Sbjct:    9 STVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGGDEFVLLTEKDILAIV 102
[Close]
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_PELLD (10 kDa chaperonin OS=Pelodictyon luteolum (strain DSM 273) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 2 
Query:  197 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 472
            ++KPL DRV+VK    EEKT GG+++P T + KP  GEVVAVG GK     + L + VK G +V+Y KY+GTE+   G ++LI+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGAGKMSDSGQLLAMPVKAGDKVLYGKYSGTEVSVEGEDYLIMRESDIFAIL 94

HSP 2 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:  491 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 709
            +LKPL DRV +K A AEE T GGL + +  KEKP  G V+AVG G + + G    + +  G+ V+Y KY+G +
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGAGKMSDSGQLLAMPVKAGDKVLYGKYSGTE 74
[Close]
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_CHLT3 (10 kDa chaperonin OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 2 
Query:  197 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 472
            ++KPL DRV+VK    EEKT GG+++P + + KPQ GEVVAVG GK     T + + V+ G +V+Y KY+GTE+  +G ++LI+RE D+  I+
Sbjct:    2 NLKPLADRVIVKPSPAEEKTKGGLYIPDSGKEKPQHGEVVAVGPGKAADNGTVVAMEVQVGQKVLYGKYSGTEVTVDGEDYLIMRESDIFAII 94

HSP 2 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:  491 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 709
            +LKPL DRV +K + AEE T GGL + ++ KEKP  G V+AVGPG   + G    + +  G  V+Y KY+G +
Sbjct:    2 NLKPLADRVIVKPSPAEEKTKGGLYIPDSGKEKPQHGEVVAVGPGKAADNGTVVAMEVQVGQKVLYGKYSGTE 74
[Close]
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_RUBXD (10 kDa chaperonin OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 2 
Query:  203 KPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            KPLG+R LVK+   EEKT  GI LP TA+ KPQ  EV+AVG+ +       DI VK G  V+++KY+GTE+  NG +++IL  DD++G++E
Sbjct:    4 KPLGERALVKLVEREEKTASGIVLPDTAKEKPQTAEVIAVGDSE-------DIKVKEGDVVVFAKYSGTEISLNGDDYMILDADDILGVVE 87
[Close]
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_PROMT (10 kDa chaperonin OS=Prochlorococcus marinus (strain NATL2A) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 2 
Query:  485 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   ++ G+ V+YSKYAG D K
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIK 84

HSP 2 Score: 88.5817 bits (218), Expect = 3.643e-17
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 2 
Query:  194 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 472
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++     +++L E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102
[Close]
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_PROMS (10 kDa chaperonin OS=Prochlorococcus marinus (strain AS9601) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 41/77 (53.25%), Postives = 59/77 (76.62%), Query Frame = 2 
Query:  485 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+E+G+R+   ++ G+ V+YSKYAG D K
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNEDGSRQTPEVSIGDKVLYSKYAGTDIK 84

HSP 2 Score: 88.1965 bits (217), Expect = 4.758e-17
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = 2 
Query:  194 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 472
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  +++L E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNEDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102
[Close]
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_PROMM (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9313) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 40/77 (51.95%), Postives = 58/77 (75.32%), Query Frame = 2 
Query:  485 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIK 84

HSP 2 Score: 87.8113 bits (216), Expect = 6.214e-17
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 2 
Query:  194 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 472
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ GEVV VG GK     ++    V  G +V+YSKYAGT+++ +   +++L E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLSTDEYVLLSEKDILAVV 102
[Close]
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_PROM1 (10 kDa chaperonin OS=Prochlorococcus marinus (strain NATL1A) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 2 
Query:  485 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   ++ G+ V+YSKYAG D K
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIK 84

HSP 2 Score: 88.5817 bits (218), Expect = 3.643e-17
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 2 
Query:  194 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 472
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++     +++L E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102
[Close]
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_LEUCK (10 kDa chaperonin OS=Leuconostoc citreum (strain KM20) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 2 
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KPLGDRV++++    E+T GGI L + A+ KP  G+VVAVG G  +   +K D++VK G QV++ KYAG E+ F GA++L L E D+V I+E
Sbjct:    2 LKPLGDRVIIEVTEAAEQTVGGIVLANNAKDKPVTGKVVAVGSGYVLNDGSKQDLTVKSGDQVLFDKYAGQEVSFEGADYLALHEKDIVAIVE 94

HSP 2 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 2 
Query:  494 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 709
            LKPL DRV I+V EA E T GG++L   +K+KP  G V+AVG G +  +G+++ L++  G+ V++ KYAG +
Sbjct:    2 LKPLGDRVIIEVTEAAEQTVGGIVLANNAKDKPVTGKVVAVGSGYVLNDGSKQDLTVKSGDQVLFDKYAGQE 73
The following BLAST results are available for this feature:
BLAST of CF417768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 494
Match NameE-valueIdentityDescription
CH10_SYNS92.523e-1853.2510 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]
CH10_SYNPX2.523e-1853.2510 kDa chaperonin OS=Synechococcus sp. (strain WH8... [more]
CH10_PELLD2.523e-1849.4610 kDa chaperonin OS=Pelodictyon luteolum (strain ... [more]
CH10_CHLT32.523e-1847.3110 kDa chaperonin OS=Chloroherpeton thalassium (st... [more]
CH10_RUBXD3.295e-1849.4510 kDa chaperonin OS=Rubrobacter xylanophilus (str... [more]
CH10_PROMT3.295e-1853.2510 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROMS3.295e-1853.2510 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROMM3.295e-1851.9510 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM13.295e-1853.2510 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_LEUCK3.295e-1848.3910 kDa chaperonin OS=Leuconostoc citreum (strain K... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-698 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417768 ID=CF417768; Name=CF417768; organism=Citrus sinensis; type=EST; length=716bp
CTCTCTCTGCATCTGCAAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAACT
GCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTGG
AATGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGGA
AACCTCTATCCATTGCTCCAGGGAACACGGTGATGTATTCCAAGTATGCA
GGGAATGACTTCAAGG
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