CF417768 | Citrus Genome Database

Overview


Name	CF417768
Unique Name	CF417768
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	716

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_SYNE7 (10 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groS PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18
Identity = 40/77 (51.95%), Postives = 58/77 (75.32%), Query Frame = 2

Query:  485 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +  + PL DRVF+KVAEAEE TAGG++L + +KEKP +G ++AVGPG  +++G+R+   +  G+ V+YSKYAG D K
Sbjct:    8 VSTVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIK 84

HSP 2 Score: 88.5817 bits (218), Expect = 3.643e-17
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = 2

Query:  194 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 472
            +++ PLGDRV VK+   EEKT GGI LP  A+ KPQ GE+VAVG GK     ++    VK G +V+YSKYAGT+++    ++++L E D++ ++
Sbjct:    9 STVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGNDDYVLLSEKDILAVV 102

[Close]

BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_PROMA (10 kDa chaperonin OS=Prochlorococcus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 2

Query:  485 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +  +KPL DRVFIKV+E+EE TAGG+LL + +KEKP +G V  VGPG  +++G+R+   +  G+ V+YSKYAG D K
Sbjct:    8 VSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIK 84

HSP 2 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 2

Query:  194 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 472
            +++KPLGDRV +K+   EEKT GGI LP TA+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++     +++L E D++ ++
Sbjct:    9 STVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102

[Close]

BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_PROM9 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9312) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 40/77 (51.95%), Postives = 59/77 (76.62%), Query Frame = 2

Query:  485 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK 84

HSP 2 Score: 87.8113 bits (216), Expect = 6.214e-17
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = 2

Query:  194 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 472
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  +++L E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102

[Close]

BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_PROM2 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9215) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 40/77 (51.95%), Postives = 59/77 (76.62%), Query Frame = 2

Query:  485 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK 84

HSP 2 Score: 87.8113 bits (216), Expect = 6.214e-17
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = 2

Query:  194 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 472
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  +++L E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102

[Close]

BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_PROM0 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9301) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 40/77 (51.95%), Postives = 59/77 (76.62%), Query Frame = 2

Query:  485 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK 84

HSP 2 Score: 87.8113 bits (216), Expect = 6.214e-17
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = 2

Query:  194 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 472
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  +++L E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102

[Close]

BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_LACZE (10 kDa chaperonin OS=Lactobacillus zeae GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 45/91 (49.45%), Postives = 66/91 (72.53%), Query Frame = 2

Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 469
            +KPLGDRV+V++   EE+T GGI L + A+ KPQ G+VVAVGEG    + K L ++VK G  V+Y KYAG+E+++ G ++L+L E D++ I
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVKYEGQDYLVLHEKDIMAI 92

HSP 2 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 2

Query:  494 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            LKPL DRV ++V E EE T GG++L   +K+KP  G V+AVG G L  EG R P+++  G+TV+Y KYAG++ K
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVK 75

[Close]

BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_LACCB (10 kDa chaperonin OS=Lactobacillus casei (strain BL23) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 45/91 (49.45%), Postives = 66/91 (72.53%), Query Frame = 2

Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 469
            +KPLGDRV+V++   EE+T GGI L + A+ KPQ G+VVAVGEG    + K L ++VK G  V+Y KYAG+E+++ G ++L+L E D++ I
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVKYEGQDYLVLHEKDIMAI 92

HSP 2 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 2

Query:  494 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            LKPL DRV ++V E EE T GG++L   +K+KP  G V+AVG G L  EG R P+++  G+TV+Y KYAG++ K
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVK 75

[Close]

BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_LACC3 (10 kDa chaperonin OS=Lactobacillus casei (strain ATCC 334) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 45/91 (49.45%), Postives = 66/91 (72.53%), Query Frame = 2

Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 469
            +KPLGDRV+V++   EE+T GGI L + A+ KPQ G+VVAVGEG    + K L ++VK G  V+Y KYAG+E+++ G ++L+L E D++ I
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVKYEGQDYLVLHEKDIMAI 92

HSP 2 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 2

Query:  494 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            LKPL DRV ++V E EE T GG++L   +K+KP  G V+AVG G L  EG R P+++  G+TV+Y KYAG++ K
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVK 75

[Close]

BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_DESOH (10 kDa chaperonin OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 2

Query:  203 KPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +PL DR+LVK    E KT GGI +P TA+ KP  G+V+AVG G+     KL  + VK G +V++ KY GTE++ +G  +LI+REDD++GILE
Sbjct:    4 RPLHDRILVKRVEEETKTKGGIIIPDTAKEKPIEGKVMAVGNGRLGEDGKLIPLEVKKGDRVLFGKYGGTEVKMDGQEYLIMREDDILGILE 95

HSP 2 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 2

Query:  497 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +PL+DR+ +K  E E  T GG+++ + +KEKP  G V+AVG G L E+G   PL +  G+ V++ KY G + K
Sbjct:    4 RPLHDRILVKRVEEETKTKGGIIIPDTAKEKPIEGKVMAVGNGRLGEDGKLIPLEVKKGDRVLFGKYGGTEVK 76

[Close]

BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_DESMR (10 kDa chaperonin OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 2

Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KPLGDRVLVK    EE T GGI +P +A+ KP  GEV+AVG GK     K L + V+ G  V+++KYAGTE++ +  + L++REDD++ ++E
Sbjct:    3 LKPLGDRVLVKRLEQEEVTKGGIIIPDSAKEKPMKGEVIAVGPGKLAEDGKHLKMHVEKGDLVLFNKYAGTEIKVDDEDFLVMREDDILAVIE 95

HSP 2 Score: 78.9518 bits (193), Expect = 2.887e-14
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 2

Query:  494 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            LKPL DRV +K  E EE T GG+++ +++KEKP  G VIAVGPG L E+G    + +  G+ V+++KYAG + K
Sbjct:    3 LKPLGDRVLVKRLEQEEVTKGGIIIPDSAKEKPMKGEVIAVGPGKLAEDGKHLKMHVEKGDLVLFNKYAGTEIK 76

The following BLAST results are available for this feature:

BLAST of CF417768 vs. ExPASy Swiss-Prot

BLAST of CF417768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 494


Match Name	E-value	Identity	Description
CH10_SYNE7	5.621e-18	51.95	10 kDa chaperonin OS=Synechococcus elongatus (stra...	[more]
CH10_PROMA	7.341e-18	53.25	10 kDa chaperonin OS=Prochlorococcus marinus GN=gr...	[more]
CH10_PROM9	7.341e-18	51.95	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_PROM2	7.341e-18	51.95	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_PROM0	7.341e-18	51.95	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_LACZE	7.341e-18	49.45	10 kDa chaperonin OS=Lactobacillus zeae GN=groS PE...	[more]
CH10_LACCB	7.341e-18	49.45	10 kDa chaperonin OS=Lactobacillus casei (strain B...	[more]
CH10_LACC3	7.341e-18	49.45	10 kDa chaperonin OS=Lactobacillus casei (strain A...	[more]
CH10_DESOH	7.341e-18	50.00	10 kDa chaperonin OS=Desulfococcus oleovorans (str...	[more]
CH10_DESMR	7.341e-18	48.39	10 kDa chaperonin OS=Desulfovibrio magneticus (str...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-698 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_H12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417768 ID=CF417768; Name=CF417768; organism=Citrus sinensis; type=EST; length=716bp
CTCTCTCTGCATCTGCAAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAACT
GCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTGG
AATGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGGA
AACCTCTATCCATTGCTCCAGGGAACACGGTGATGTATTCCAAGTATGCA
GGGAATGACTTCAAGG