CF417768

Overview
NameCF417768
Unique NameCF417768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_OCEIH (10 kDa chaperonin OS=Oceanobacillus iheyensis GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.747e-19
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 472
            IKPLGDRV++++   EE T  GI LP +A+ KPQ G+VVAVG G+     K+ + V  G ++I+SK+AGTE+++ G  +LILRE+D++ I+
Sbjct:    2 IKPLGDRVVIELVEQEETTASGIVLPDSAKEKPQEGKVVAVGSGRVENGEKIALEVSEGDRIIFSKFAGTEVKYEGTEYLILRENDILAII 92          

HSP 2 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 34/74 (45.95%), Postives = 53/74 (71.62%), Query Frame = 2
Query:  494 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +KPL DRV I++ E EETTA G++L +++KEKP  G V+AVG G + E G +  L ++ G+ +++SK+AG + K
Sbjct:    2 IKPLGDRVVIELVEQEETTASGIVLPDSAKEKPQEGKVVAVGSGRV-ENGEKIALEVSEGDRIIFSKFAGTEVK 74          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_CYAP8 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 8801) GN=groS PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.747e-19
Identity = 45/95 (47.37%), Postives = 68/95 (71.58%), Query Frame = 2
Query:  194 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ GE+V VG GK     ++ +  VK G +V+YSKYAGT+++  G ++++L E D++ +++
Sbjct:    9 STVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQIGEIVTVGPGKRNDDGSRSEPEVKVGDKVLYSKYAGTDIKLGGEDYVLLSEKDILAVVD 103          

HSP 2 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  485 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +  +KPL DRVF+KV+ +EE TAGG+LL + +KEKP IG ++ VGPG  +++G+R    +  G+ V+YSKYAG D K
Sbjct:    8 VSTVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQIGEIVTVGPGKRNDDGSRSEPEVKVGDKVLYSKYAGTDIK 84          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_CHLPD (10 kDa chaperonin OS=Chlorobium phaeobacteroides (strain DSM 266) GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.747e-19
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  197 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            ++KPL DRV+VK    EEKT GG+ +P T + KPQ GEVVAVG GK     + L++ +K G +V+Y KY+GTE+   G ++LI+RE D+  IL+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLIIPDTGKEKPQYGEVVAVGTGKVADSGQLLEMQIKVGQKVLYGKYSGTEVSVEGEDYLIMRESDIFAILD 95          

HSP 2 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  491 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 709
            +LKPL DRV +K A AEE T GGL++ +  KEKP  G V+AVG G + + G    + I  G  V+Y KY+G +
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLIIPDTGKEKPQYGEVVAVGTGKVADSGQLLEMQIKVGQKVLYGKYSGTE 74          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_BACTR (10 kDa chaperonin OS=Bacillus thermoglucosidasius GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.747e-19
Identity = 46/92 (50.00%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 472
            IKPLGDRV+++I   EEKT  GI LP TA+ KPQ G+VVAVG+G+ +    ++   V+ G ++I+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    2 IKPLGDRVVIEIVETEEKTASGIVLPDTAKEKPQEGKVVAVGKGRVLDNGQRVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93          

HSP 2 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  494 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +KPL DRV I++ E EE TA G++L + +KEKP  G V+AVG G + + G R    +  G+ +++SKYAG + K
Sbjct:    2 IKPLGDRVVIEIVETEEKTASGIVLPDTAKEKPQEGKVVAVGKGRVLDNGQRVAPEVEVGDRIIFSKYAGTEVK 75          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_GEOUR (10 kDa chaperonin OS=Geobacter uraniireducens (strain Rf4) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.282e-19
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            ++P+ DR++VK    E KT GGIF+P TA+ KP  GEVVAVG GK     K L + VK G +V++ KY+GTE++  G + LI+REDD++G++E
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIFIPETAKEKPMEGEVVAVGNGKRTEDGKVLPLDVKVGDKVLFGKYSGTEIKVEGQDFLIMREDDILGVIE 95          

HSP 2 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  494 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            L+P+ DR+ +K  E E  TAGG+ + E +KEKP  G V+AVG G   E+G   PL +  G+ V++ KY+G + K
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIFIPETAKEKPMEGEVVAVGNGKRTEDGKVLPLDVKVGDKVLFGKYSGTEIK 76          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_GEOMG (10 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.282e-19
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            ++PL DR+LVK    E+ T GGIF+P TA+ KPQ GE+VAVG GK     K + I +K G +V++ KYAGT+++  G + LI+REDD++G++E
Sbjct:    3 LRPLQDRILVKRIEEEQVTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPIDLKVGDKVLFGKYAGTDIKVEGEDFLIMREDDILGVIE 95          

HSP 2 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 2
Query:  494 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            L+PL DR+ +K  E E+ TAGG+ + + +KEKP  G ++AVG G   E+G   P+ +  G+ V++ KYAG D K
Sbjct:    3 LRPLQDRILVKRIEEEQVTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPIDLKVGDKVLFGKYAGTDIK 76          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_DESAA (10 kDa chaperonin OS=Desulfatibacillum alkenivorans (strain AK-01) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.282e-19
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            ++PL DR+LVK    E KT GGI +P TA+ KP  GE+VAVG G+     TK+ + VK G +V++ KY+GTE++  G  +LI+REDDV+GI++
Sbjct:    3 LQPLADRILVKRLAEETKTKGGIIIPDTAKEKPAEGEIVAVGPGRNAEDGTKIALEVKVGDRVLFGKYSGTEVKIEGEEYLIMREDDVLGIVQ 95          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_CLOAB (10 kDa chaperonin OS=Clostridium acetobutylicum GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.282e-19
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            I+PLGDRV++K    EE T  GI LPS+A+ KPQ  EVVAVG G  V   ++ + VK G +V +SKY+GTE++ +    LILR+DD++GI+E
Sbjct:    3 IRPLGDRVVIKRLEAEETTKSGIVLPSSAKEKPQMAEVVAVGPGGVVDGKEIQMQVKTGDKVFFSKYSGTEIKVDNEELLILRQDDILGIVE 94          

HSP 2 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  494 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            ++PL DRV IK  EAEETT  G++L  ++KEKP +  V+AVGPG +  +G    + +  G+ V +SKY+G + K
Sbjct:    3 IRPLGDRVVIKRLEAEETTKSGIVLPSSAKEKPQMAEVVAVGPGGV-VDGKEIQMQVKTGDKVFFSKYSGTEIK 75          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_MICAN (10 kDa chaperonin OS=Microcystis aeruginosa (strain NIES-843) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.980e-19
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 2
Query:  485 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            +  +KPL DRVF+KV+ +EE TAGG+ L +A+KEKP IG V+AVGPG  +++G+R P+ +  G+ V+YSKYAG D K
Sbjct:    8 VTTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIK 84          

HSP 2 Score: 94.7449 bits (234), Expect = 5.084e-19
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  194 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVV 463
            T++KPLGDRV VK+   EEKT GGIFLP  A+ KPQ GEVVAVG GK     ++  + V  G +V+YSKYAGT+++  G   ++L E D++
Sbjct:    9 TTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIKLGGEEFVLLSEKDIL 99          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_LACPL (10 kDa chaperonin OS=Lactobacillus plantarum GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.980e-19
Identity = 46/91 (50.55%), Postives = 69/91 (75.82%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 469
            +KPLGDRV+++ +  EE+T GGI + + A+ KPQ+G+VVAV +G+ +   TK+D SVK G QV++ KYAGTE+++ GA +L+L E D+V I
Sbjct:    2 LKPLGDRVILQQQEEEEQTIGGIVIANNAKEKPQSGKVVAVNDGRVLDNGTKVDPSVKVGDQVLFDKYAGTEVKYQGAKYLVLHEKDIVAI 92          
The following BLAST results are available for this feature:
BLAST of CF417768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 494
Match NameE-valueIdentityDescription
CH10_OCEIH1.747e-1948.3510 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]
CH10_CYAP81.747e-1947.3710 kDa chaperonin OS=Cyanothece sp. (strain PCC 88... [more]
CH10_CHLPD1.747e-1948.9410 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH10_BACTR1.747e-1950.0010 kDa chaperonin OS=Bacillus thermoglucosidasius ... [more]
CH10_GEOUR2.282e-1949.4610 kDa chaperonin OS=Geobacter uraniireducens (str... [more]
CH10_GEOMG2.282e-1949.4610 kDa chaperonin OS=Geobacter metallireducens (st... [more]
CH10_DESAA2.282e-1949.4610 kDa chaperonin OS=Desulfatibacillum alkenivoran... [more]
CH10_CLOAB2.282e-1951.0910 kDa chaperonin OS=Clostridium acetobutylicum GN... [more]
CH10_MICAN2.980e-1954.5510 kDa chaperonin OS=Microcystis aeruginosa (strai... [more]
CH10_LACPL2.980e-1950.5510 kDa chaperonin OS=Lactobacillus plantarum GN=gr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-698 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417768 ID=CF417768; Name=CF417768; organism=Citrus sinensis; type=EST; length=716bp
CTCTCTCTGCATCTGCAAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAACT
GCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTGG
AATGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGGA
AACCTCTATCCATTGCTCCAGGGAACACGGTGATGTATTCCAAGTATGCA
GGGAATGACTTCAAGG
back to top