CF417768

Overview
NameCF417768
Unique NameCF417768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10C_POPEU (20 kDa chaperonin (Fragments) OS=Populus euphratica PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 40/54 (74.07%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  494 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKP 655
            +KPL DRV    AEAEE TAGGLLLTE +KEKPSIG VIAVGPG LDEEG   P
Sbjct:    4 IKPLGDRV----AEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITP 53          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_WOLTR (10 kDa chaperonin OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 37/94 (39.36%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  197 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEG-KTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            S+  L D VL  IK + E+  GGI LPS+A+ KP  GEV+A+GEG +     ++ ++VK G +V Y ++AGTE+E      ++++E D++ I++
Sbjct:    5 SLSVLDDSVL--IKPINEEKQGGIVLPSSAEKKPTKGEVIAIGEGSRNSSGERIALTVKAGDKVFYRQWAGTEIEHGSEKLIVMKESDILAIIK 96          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STAAW (10 kDa chaperonin OS=Staphylococcus aureus (strain MW2) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STAAU (10 kDa chaperonin OS=Staphylococcus aureus GN=groS PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STAAT (10 kDa chaperonin OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STAAS (10 kDa chaperonin OS=Staphylococcus aureus (strain MSSA476) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STAAR (10 kDa chaperonin OS=Staphylococcus aureus (strain MRSA252) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STAAN (10 kDa chaperonin OS=Staphylococcus aureus (strain N315) GN=groS PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STAAM (10 kDa chaperonin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=groS PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STAAE (10 kDa chaperonin OS=Staphylococcus aureus (strain Newman) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
The following BLAST results are available for this feature:
BLAST of CF417768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 494
Match NameE-valueIdentityDescription
CH10C_POPEU5.444e-1374.0720 kDa chaperonin (Fragments) OS=Populus euphratic... [more]
CH10_WOLTR7.110e-1339.3610 kDa chaperonin OS=Wolbachia sp. subsp. Brugia m... [more]
CH10_STAAW7.110e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAU7.110e-1336.5610 kDa chaperonin OS=Staphylococcus aureus GN=groS... [more]
CH10_STAAT7.110e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAS7.110e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAR7.110e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAN7.110e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAM7.110e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAE7.110e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-698 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417768 ID=CF417768; Name=CF417768; organism=Citrus sinensis; type=EST; length=716bp
CTCTCTCTGCATCTGCAAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAACT
GCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTGG
AATGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGGA
AACCTCTATCCATTGCTCCAGGGAACACGGTGATGTATTCCAAGTATGCA
GGGAATGACTTCAAGG
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