CF417768

Overview
NameCF417768
Unique NameCF417768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STAAC (10 kDa chaperonin OS=Staphylococcus aureus (strain COL) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STAAB (10 kDa chaperonin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STAA9 (10 kDa chaperonin OS=Staphylococcus aureus (strain JH9) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STAA8 (10 kDa chaperonin OS=Staphylococcus aureus (strain NCTC 8325) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STAA3 (10 kDa chaperonin OS=Staphylococcus aureus (strain USA300) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STAA2 (10 kDa chaperonin OS=Staphylococcus aureus (strain JH1) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STAA1 (10 kDa chaperonin OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +   T++   VK G +V++ +YAGTE++ +   +L+L E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_RHOFD (10 kDa chaperonin OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 38/93 (40.86%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  200 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLD-ISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 475
            ++PL DRV+VK    E KT  GI +P +A  KP  GEV+AVG GK   K ++  ++VK G +V++ KY+G  ++  G   L+++EDD+  ++E
Sbjct:    3 LRPLHDRVIVKRVENETKTASGIVIPDSAAEKPDQGEVLAVGPGKKNDKGEISPMAVKVGDRVLFGKYSGQTVKVAGDELLVMKEDDLFAVVE 95          

HSP 2 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 30/74 (40.54%), Postives = 50/74 (67.57%), Query Frame = 2
Query:  494 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            L+PL+DRV +K  E E  TA G+++ +++ EKP  G V+AVGPG  +++G   P+++  G+ V++ KY+G   K
Sbjct:    3 LRPLHDRVIVKRVENETKTASGIVIPDSAAEKPDQGEVLAVGPGKKNDKGEISPMAVKVGDRVLFGKYSGQTVK 76          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_THICR (10 kDa chaperonin OS=Thiomicrospira crunogena (strain XCL-2) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 39/95 (41.05%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  197 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHL-ILREDDVVGILE 475
            +IKPL DRV+V+    ++++ GGI LP +AQ K   GEVVAVG GK     + + ++VK G +V++ +Y+G E++ +    L ++REDD++ I+E
Sbjct:    2 NIKPLHDRVVVRQVEEQKESTGGILLPGSAQEKENLGEVVAVGPGKAADNGSIIPMTVKVGDKVMFGQYSGQEVKDDAGKPLKVMREDDIIAIVE 96          

HSP 2 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 28/75 (37.33%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  491 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 715
            ++KPL+DRV ++  E ++ + GG+LL  +++EK ++G V+AVGPG   + G+  P+++  G+ VM+ +Y+G + K
Sbjct:    2 NIKPLHDRVVVRQVEEQKESTGGILLPGSAQEKENLGEVVAVGPGKAADNGSIIPMTVKVGDKVMFGQYSGQEVK 76          
BLAST of CF417768 vs. ExPASy Swiss-Prot
Match: CH10_STACT (10 kDa chaperonin OS=Staphylococcus carnosus (strain TM300) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  494 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 709
            LKPL +RV IK  E+E+TT  G++LTE +KEK + G VIAVGPG L + G R    +  G+TV++ +YAG++
Sbjct:    2 LKPLGNRVIIKRVESEQTTKSGIVLTEKAKEKSNEGKVIAVGPGRLLDNGERVTPEVKEGDTVVFEQYAGSE 73          
The following BLAST results are available for this feature:
BLAST of CF417768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 494
Match NameE-valueIdentityDescription
CH10_STAAC7.110e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAB7.110e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAA97.110e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAA87.110e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAA37.110e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAA27.110e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAA17.110e-1336.5610 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_RHOFD7.110e-1340.8610 kDa chaperonin OS=Rhodoferax ferrireducens (str... [more]
CH10_THICR9.286e-1341.0510 kDa chaperonin OS=Thiomicrospira crunogena (str... [more]
CH10_STACT9.286e-1350.0010 kDa chaperonin OS=Staphylococcus carnosus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-698 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417768 ID=CF417768; Name=CF417768; organism=Citrus sinensis; type=EST; length=716bp
CTCTCTCTGCATCTGCAAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAACT
GCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTGG
AATGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGGA
AACCTCTATCCATTGCTCCAGGGAACACGGTGATGTATTCCAAGTATGCA
GGGAATGACTTCAAGG
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