CF417775

Overview
NameCF417775
Unique NameCF417775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_PAVLU (Preprotein translocase subunit secY OS=Pavlova lutherii GN=secY PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 71/239 (29.71%), Postives = 116/239 (48.54%), Query Frame = 3
Query:    9 EGEAGRKKVLQYTRYASVGFAIVQXIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGL--ATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVA-------LNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            EGE GRK +++YTR  +V F I++       LR +V ++              GS    ++ E I++  +GNG+SLLI    +S       +   ++    +   L    III+ + +++     QE  RKIP+  A +         R +Y+P +   +GV+PIIFS+S L     L   T I  L  A +A       +N    FY  T ++LI FF+++YT + L P D+++ LK+
Sbjct:   99 EGEEGRKTIVRYTRILTVLFCIIESFFLSNSLRSFVFNWNSISYFVVAAAVTTGSLVLVWLSEVITERGIGNGSSLLILIGNLSRFRFLINKDDFDSLNVSSQSNLYIIYIIITLVSMLIFSTLSQEGARKIPVVSAKQLIDGVEDDMRRSYIPIRFGQAGVVPIIFSSSIL-----LFLTTSIKQLPNANIATRVILDSVNLQQIFYFFTFLVLIIFFSFFYTLIILSPSDIAKNLKK 332          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_ANTSP (Preprotein translocase subunit secY OS=Antithamnion sp. GN=secY PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 70/235 (29.79%), Postives = 119/235 (50.64%), Query Frame = 3
Query:    3 KREGEAGRKKVLQYTRYASVGFAIVQXIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDG--NYIGLATIIISFILLVLGI-VYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            K EGE GR+K+ Q TRY ++ +A++Q +   ++    +N                 S    +  E IS+  +GNG SLLIF +IIS +P +        F  G  N +   ++I+SF +++L I + +QE ERKI I  +++   +   L        K+N  GVMP +F+++ +     ++  T     +   + L P    YLP  ++ I  F+Y YT L L+P+D+++ LK+
Sbjct:   93 KEEGEIGRQKINQLTRYLTLLWALIQSLSIAIW----INHMYLIHLFELCASLTTSSMIAMWFSEIISEYGVGNGPSLLIFQNIISSIPKNLQNYT---FNIGTTNTVLNGSLILSFGIIILIINILIQEGERKIAI-LSAKQLGKINELNHKVIFLLKLNQGGVMPFVFASAVVHTFLFISNNTNSKITQFINLFL-PNQFLYLPLYLIFIITFSYVYTSLILNPEDIAKNLKK 318          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_CYACA (Preprotein translocase subunit secY OS=Cyanidium caldarium GN=secY PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 72/235 (30.64%), Postives = 116/235 (49.36%), Query Frame = 3
Query:    9 EGEAGRKKVLQYTRYASVGFAIVQXIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAF--QDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALN---PGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            EGE G+KK+ + T+Y S  FA ++ +  VL L+ Y  D+              G+    ++ + IS   +G G S++IF +I S    +F + +          ++  A+     +  +  IV+VQEA RK+PI  A +  S S       +LP ++N  GVMPII ++S LAL   + R+ G++ L +A   +N   P    +L      I FFNY Y  L L+  ++S  LK+
Sbjct:   95 EGEIGKKKLNKITKYLSFCFAFIESLAIVLRLQKYAFDWNLYFIVQTTLILISGAMLVMWLADNISYKGIGTGASVIIFVNIAS----AFAKFLLNQLFVHSIKFLDFASYFALIVFSIACIVFVQEAIRKVPIISAKQLDSTS-FYSNDYFLPLRINQGGVMPIILASSLLALVDYVIRY-GLSTL-QAVYFINDILPFKILFLLLYSAFIIFFNYLYCSLVLNCFELSNNLKK 322          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_ODOSI (Preprotein translocase subunit secY OS=Odontella sinensis GN=secY PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 68/246 (27.64%), Postives = 120/246 (48.78%), Query Frame = 3
Query:    3 KREGEAGRKKVLQYTRYASVGFAIVQXIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLV--LGIVYVQEAERKI------PINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALP------GTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            K  G   R+ +   TR  ++G++++Q      YL+  + ++              G+    ++ E I++  LGNG SLLI+T+I+S LP    + + E+   G     + ++  F+L V   GIV +QE  RK+       +N  S   S S  L+   Y+P + N +GVMPII +T+ L +P      G L   T +  L    V +      Y  +  +LI  F+ +Y+ + ++P D+S++L++
Sbjct:   97 KEGGAEARRSINSLTRLLTLGWSLIQSTSVAFYLKRALFEWNLVLAFEIVIWLTTGAMIVLWLSEIITEYGLGNGPSLLIYTNIVSSLPGFVKQVITES--SGKVPIGSWLLSGFVLFVALYGIVLLQEGMRKVYLISSKQLNQTSLPFSGSSNLESGYYIPLRFNQAGVMPIILTTAVLVIPTFIYNLGLLRILTPLITL---PVFVKSYKIIYWVSYFVLILLFSLFYSTIVVNPKDLSDELQK 337          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_MYCGA (Preprotein translocase subunit secY OS=Mycoplasma gallisepticum GN=secY PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 63/250 (25.20%), Postives = 124/250 (49.60%), Query Frame = 3
Query:    6 REGEAGRKKVLQYTRYASVGFAIVQXIGQVLYLRPYVN------DFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASF--------GRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALK-----KAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            + GE GR+++   TR+ ++ FA+VQ    +  +    N      +               G+    +IG+ IS   +GNG +LLI + I++ LP  F        G  ++      + I  +   ++F++L+L I +V  + R+IPI           G ++  YLP K+N++GV+P+IF++S +++P T+A F   +  +       ++    G S Y    ++LI  F ++Y+++Q++P+ ++E   +
Sbjct:  112 KSGELGRRRIELITRFVTLPFAVVQAFAIIALINNQRNGAIRFENGGILHQAFYIVTMTAGTYIGIFIGDIISKKGVGNGITLLILSGILARLPDGFIVMYRVLGGVIISTNPILTSAINFSLYFLAFLVLLLAISFVNSSTRRIPIQQTGE--GMVLGNEKLPYLPIKLNAAGVIPVIFASSIMSIPITIAEFQPQSEARWFVEDYLSLRTPVGISLY----VILIIIFTFFYSYIQINPEQLAENFNK 355          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_MYCPN (Preprotein translocase subunit secY OS=Mycoplasma pneumoniae GN=secY PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 66/254 (25.98%), Postives = 124/254 (48.82%), Query Frame = 3
Query:   12 GEAGRKKVLQYTRYASVGFAIVQXIGQV------------LYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASF--------GRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASR-YTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNI----LLIAFFNYYYTFLQLDPDDVSEQLKR 698
            GE GR+K+   TR  ++ FA+VQ    +            + L+   +DF              G+  + ++G+ IS   +GNG +LLI + I++ LP  F        G  V         I      ++F+ L+    ++ +  RKIPI  + +   + S  L    YLP KVNS+GV+P+IF++S +++P T+A+F       ++   +    S   PT I    +L+  F+++Y+++Q++P+ +++  ++
Sbjct:  117 GEVGRRKIEMITRIITLPFALVQSFAVIQIATNSGGGSSPITLKNNGSDFVAFYIIAMTA----GTYLSVFLGDTISKKGIGNGITLLILSGILAQLPEGFIAAYSVLSGVVVTINATLTTAISFFIYFMAFVTLLFATTFITQETRKIPIQQSGQGLVTESSALP---YLPIKVNSAGVIPVIFASSIMSIPVTIAQF---QPQTESRWFVEDYLSLSKPTGIVLYGILVILFSFFYSYIQINPERLAKNFEK 360          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_MYCCT (Preprotein translocase subunit secY OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=secY PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 71/265 (26.79%), Postives = 128/265 (48.30%), Query Frame = 3
Query:    6 REGEAGRKKVLQYTRYASVGFAIVQXIGQVLYLRPY---------VNDFXXXXXXXXXXXXXX--GSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRT----VAEAFQDGN--YIGLATIIIS---FILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSF------YLPTNI--------LLIAFFNYYYTFLQLDPDDVSEQLKR 698
            + GE GRKK+ + T+   + FA++Q    +  L             N                  GS F  +I ++I+   +GNG S++IF  II  +P++   T    V+ + ++ N  + GL   +I    F+L++L +V + EAERKIPI       + S   + + YLP K+N++GV+P+IF+++ ++ P T+++            A+NP   F      YL  N         +LI  F + Y+ +Q++P+ ++E  ++
Sbjct:  125 KSGERGRKKLDKLTKIIMIPFALMQAEATIFTLSSQGLIIPGWDNTNAIANSAFYYILIPLVMLGGSFFMLWIADQITIKGIGNGISIVIFIGIIISMPSNLKSTFEYWVSNSGEEANIFFSGLLNFMIYISVFLLVILSVVIMNEAERKIPIQQTGSGLTDSS--EHTPYLPLKLNNAGVIPVIFASAIISTPITISQI---------IEAVNPDSGFVIFTRDYLSFNTWWGISIFGILIVLFTFLYSQVQINPEKIAENFQK 378          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_MYCGE (Preprotein translocase subunit secY OS=Mycoplasma genitalium GN=secY PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.511e-17
Identity = 63/252 (25.00%), Postives = 125/252 (49.60%), Query Frame = 3
Query:   12 GEAGRKKVLQYTRYASVGFAIVQXIGQV------------LYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASF--------GRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARF---TGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            GE GR+K+   TR  ++ FA+VQ    +            + L    ++F              G+    ++G+ IS   +GNG +LLI + I+S LP  F        G  +    Q    I      ++F++L+    ++ +A RKIPI  + +       ++   YLP KVN++GV+P+IF++S +++P T+A+F   T      +  ++L+     +L    +L+  F+++Y+++Q++P+ +++  ++
Sbjct:  115 GEVGRRKIEMITRIITLPFALVQAFAVIQIATNAGTGSSPISLANSGSEFIAFYIIAMTA----GTYMAVFLGDTISKKGVGNGITLLILSGILSQLPQGFIAAYNVLSGIVITLTPQLTAAISFFIYFLAFLVLLFATTFITQATRKIPIQQSGQ--GLVSEVKTLPYLPIKVNAAGVIPVIFASSIMSIPVTIAQFQPQTESRWFVEDYLSLSTPVGIFL--YAVLVILFSFFYSYIQINPERLAKNFEK 358          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_CYAPA (Preprotein translocase subunit secY OS=Cyanophora paradoxa GN=secY PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 52/191 (27.23%), Postives = 101/191 (52.88%), Query Frame = 3
Query:    3 KREGEAGRKKVLQYTRYASVGFAIVQXIG-QVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPAS----FGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSR---------SGGLQRSAYLPFKVNSSGVMPIIFSTS--SLALP 527
            K + E  +++  ++TRY +V +A +Q I    +++RPY  ++              G+     I E+I+++ L NG+SLLIF +II+ +P S    F   +   F   + + + ++ +SFI + + I+ +QE+ R +P+  A +   R         +   +  AY+ F++  +G+MP+IF+++   LALP
Sbjct:  140 KEQEEIAQREFKKWTRYLTVIWAFIQSIVISWIWIRPYALNWDFFLGLKVVVALTLGAVIVMIIAEQITEIGLTNGSSLLIFINIIARIPNSIEQLFNSNINWTFPMISSL-ILSLSLSFITMFV-IIGLQESGRPVPVLIARQEAERQKFNEPITEAERRKTQAYIFFQLLPAGIMPVIFASTIFDLALP 328          
The following BLAST results are available for this feature:
BLAST of CF417775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
SECY_PAVLU3.393e-2029.71Preprotein translocase subunit secY OS=Pavlova lut... [more]
SECY_ANTSP9.871e-2029.79Preprotein translocase subunit secY OS=Antithamnio... [more]
SECY_CYACA1.684e-1930.64Preprotein translocase subunit secY OS=Cyanidium c... [more]
SECY_ODOSI2.199e-1927.64Preprotein translocase subunit secY OS=Odontella s... [more]
SECY_MYCGA3.176e-1825.20Preprotein translocase subunit secY OS=Mycoplasma ... [more]
SECY_MYCPN1.576e-1725.98Preprotein translocase subunit secY OS=Mycoplasma ... [more]
SECY_MYCCT1.576e-1726.79Preprotein translocase subunit secY OS=Mycoplasma ... [more]
SECY_MYCGE3.511e-1725.00Preprotein translocase subunit secY OS=Mycoplasma ... [more]
SECY_CYAPA8.376e-1127.23Preprotein translocase subunit secY OS=Cyanophora ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-705 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417775 ID=CF417775; Name=CF417775; organism=Citrus sinensis; type=EST; length=698bp
AGAAAAGAGAAGGTGAAGCGGGAAGGAAGAAAGTGCTTCAGTACACCCGA
TATGCTTCGGTTGGTTTTGCAATAGTACAGGNTATTGGTCAAGTCCTTTA
TCTTCGTCCCTATGTCAATGACTTCAGTACGGAATGGGTTCTGACATCTG
TTACTTTATTGACACTTGGCTCTGCATTCACTACATACATTGGGGAAAGG
ATCTCTGATCTAAAACTTGGAAATGGCACGTCTCTTTTGATATTCACGAG
CATTATCTCCTACTTGCCAGCATCATTTGGTAGGACTGTCGCTGAGGCAT
TCCAGGATGGTAACTACATTGGGCTAGCCACCATTATTATTTCATTCATC
CTATTAGTCCTCGGCATTGTATATGTCCAGGAAGCAGAGAGAAAAATCCC
AATCAACTATGCCTCCAGATACACTAGCAGAAGCGGAGGGCTCCAAAGAT
CTGCTTACCTACCCTTTAAGGTGAATAGTTCTGGAGTGATGCCAATCATA
TTTTCCACATCATCACTGGCTCTTCCCGGTACTTTAGCACGATTCACTGG
TATAGCTGCACTTAAGAAGGCTGCAGTGGCTTTGAATCCAGGGGGTTCGT
TCTACCTTCCGACCAATATCCTCTTGATAGCTTTCTTCAACTACTACTAC
ACTTTCCTGCAATTGGATCCTGATGATGTCAGTGAACAGTTGAAGCGC
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