CF417789

Overview
NameCF417789
Unique NameCF417789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: CRK36_ARATH (Cysteine-rich receptor-like protein kinase 36 OS=Arabidopsis thaliana GN=CRK36 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 53/146 (36.30%), Postives = 79/146 (54.11%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDTHXTTA-VRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDG 437
            LLD E    V DFG+A+L +  +T   T+ V GT G++APEY+  G+ S K+DV+ +G+MLLE+I+G++        N +   L  +             +DP L  N    E+ +LIQ+ LLC Q +   RP M+ V+  L  DG
Sbjct:  472 LLDAEMNPKVADFGMARLFNMDETRGETSRVVGTYGYMAPEYVRHGQFSAKSDVYSFGVMLLEMISGEKN------KNFETEGLPAFAWKRWIEGELESIIDPYLNEN-PRNEIIKLIQIGLLCVQENAAKRPTMNSVITWLARDG 610          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: SIRK_ARATH (Senescence-induced receptor-like serine/threonine-protein kinase OS=Arabidopsis thaliana GN=SIRK PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.134e-16
Identity = 55/173 (31.79%), Postives = 94/173 (54.34%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDT-HXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEG--DGLA---ERWDEWQKVEVLRQEVELAP 503
            LL+E+ +A + DFGL++    + +   +T V G+IG++ PEY ST + +EK+DV+  G++LLE+ITGQ A   ++    + V + D V            VD  L+  Y      ++ ++AL CT+ +   RP MS+VV  L+    G+    E +D+  K+  +  + E+ P
Sbjct:  704 LLNEKLQAKMADFGLSRSFSVEGSGQISTVVAGSIGYLDPEYYSTRQMNEKSDVYSLGVVLLEVITGQPAIASSK---TEKVHISDHVRSILANGDIRGIVDQRLRERYDVGSAWKMSEIALACTEHTSAQRPTMSQVVMELKQIVYGIVTDQENYDDSTKMLTVNLDTEMVP 873          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.134e-16
Identity = 48/139 (34.53%), Postives = 76/139 (54.68%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYK-DTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVV 416
            LL+E   A + DFGL++    + +TH +T V GT G++ PEY  T   +EK+DV+ +GI+LLE+IT Q   + +R    +   + +WV            +DP L  +Y    V + +++A+ C   S   RP MS+VV
Sbjct:  724 LLNEHLHAKLADFGLSRSFPIEGETHVSTVVAGTPGYLDPEYYRTNWLNEKSDVYSFGIVLLEIITNQLVINQSR----EKPHIAEWVGLMLTKGDIQNIMDPKLYGDYDSGSVWRAVELAMSCLNPSSARRPTMSQVV 858          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.134e-16
Identity = 48/143 (33.57%), Postives = 80/143 (55.94%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYK-DTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLE 428
            LLD+   A V DFG +K    + D++ +  VRGT G++ PEY  T + SEK+DVF +G++LLE+++G+   ++ R     +  L++W             VDP ++  Y    + ++++VAL C +     RP M ++VR LE
Sbjct:  729 LLDQSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKR--PRIEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELE 869          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: CRK8_ARATH (Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana GN=CRK8 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.134e-16
Identity = 51/144 (35.42%), Postives = 78/144 (54.17%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDTHXTTA-VRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQR--AFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRML 425
            LLD +    + DFG+A++     T   T+ + GT G++APEY   G+ S K+DV+ +G+++LE+I+G++  +FD +  A D    LL               VDP + NN   +EV + I + LLC Q  P  RP +S V  ML
Sbjct:  485 LLDADINPKIADFGMARIFGLDQTQDNTSRIVGTYGYMAPEYAMHGQFSMKSDVYSFGVLVLEIISGRKNSSFDESDGAQD----LLTHTWRLWTNRTALDLVDPLIANNCQNSEVVRCIHIGLLCVQEDPAKRPTISTVFMML 624          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: CRK26_ARATH (Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana GN=CRK26 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.134e-16
Identity = 48/149 (32.21%), Postives = 78/149 (52.35%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDT--HXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLA 443
            LLDEE    + DFG+A+L D   T    T  + GT G++APEY+  G+ S KTDV+ +G+++LE+I+G++    +   +  D++   W                   ++Y    + + I + LLC Q    +RP M+ VV ML+G  +A
Sbjct:  476 LLDEEMTPKIADFGMARLFDIDHTTQRYTNRIVGTFGYMAPEYVMHGQFSFKTDVYSFGVLVLEIISGKKNSGFSSEDSMGDLISFAWRNWKEGVALNLVDKILMTMSSYSSNMIMRCINIGLLCVQEKVAERPSMASVVLMLDGHTIA 624          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: Y5189_ARATH (Probable LRR receptor-like protein kinase At1g51890 OS=Arabidopsis thaliana GN=At1g51890 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16
Identity = 55/175 (31.43%), Postives = 88/175 (50.29%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYK-DTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRML-EGDGLAERWDEWQKVEVLRQEVELAPHPNSDW 521
            LL+E  +A + DFGL++      ++H  T V GT G++ PEY  T   SEK+DV+ +G++LLE++T Q   +     N +   + +WV            VDP L  +Y    V +++++AL C   S   RP M  VV  L E   L     +  +   +++ VE +P   SD+
Sbjct:  701 LLNERSQAKLADFGLSRSFPVDGESHVMTVVAGTPGYLDPEYYRTNWLSEKSDVYSFGVVLLEIVTNQPVMN----KNRERPHINEWVMFMLTNGDIKSIVDPKLNEDYDTNGVWKVVELALACVNPSSSRRPTMPHVVMELNECLALEIERKQGSQATYIKESVEFSPSSASDF 871          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: Y2393_ARATH (Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16
Identity = 47/143 (32.87%), Postives = 80/143 (55.94%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKL-MDYKDTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLE 428
            LLD+ F A V DFGL+K   D   TH +TAV+G+ G++ PEYL+  + +EK+DV+ +G+++LE++ G+   D +     + V L++W             +DP L       EV++  +V   C   + ++RP M +++  LE
Sbjct:  619 LLDDNFMAKVADFGLSKTGPDLDQTHVSTAVKGSFGYLDPEYLTRQQLTEKSDVYSFGVVMLEVVCGRPVIDPS--LPREKVNLIEWAMKLVKKGKLEDIIDPFLVGKVKLEEVKKYCEVTEKCLSQNGIERPAMGDLLWNLE 759          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: WAKLM_ARATH (Wall-associated receptor kinase-like 17 OS=Arabidopsis thaliana GN=WAKL17 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16
Identity = 52/198 (26.26%), Postives = 95/198 (47.98%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRML-------EGDGLAERWDEWQKVEVLRQEVELAP--HPNSDWIVDSTENLHAVELSGP 569
            LLDE++ A V DFG ++ +    TH TT + GT+G++ PEY  + + +EK+DV+ +G++L ELITG +   + +    + + L +              +D  ++++    +V  +  +A+ C      +RP M EV   L       E   +  R DE ++ + + +E E+    H    W +  T    ++  S P
Sbjct:  577 LLDEKYRAKVADFGTSRSVTIDQTHWTTVISGTVGYVDPEYYRSSQYTEKSDVYSFGVILAELITGDKPVIMVQ-NTQEIIALAEHFRVAMKERRLSDIMDARIRDDSKPEQVMAVANLAMKCLSSRGRNRPNMREVFTELERICTSPEDSQVQNRIDEEEEEDGVEEEEEVVTIVHRGDSWSIGVTAPASSIVASPP 773          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: WAKLI_ARATH (Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16
Identity = 55/187 (29.41%), Postives = 91/187 (48.66%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELS 563
            LLDE++ A V DFG ++ ++   TH TT V GT G++ PEY  T + ++K+DV+ +G++L+ELITG++ F + R   +++  L+               VD  ++      +V  + ++A  C       RP M EV   LE    +    E    E   +E  +  + +  W VD T      +LS
Sbjct:  553 LLDEKYRAKVSDFGTSRSINVDQTHLTTLVAGTFGYLDPEYFQTSQFTDKSDVYSFGVVLVELITGEKPFSVMR--PEENRGLVSHFNEAMKQNRVLDIVDSRIKEGCTLEQVLAVAKLARRCLSLKGKKRPNMREVSVELERIRSSPEDLELHIEEEDEEECAMEINMDDSWSVDMTAPASLFDLS 737          
The following BLAST results are available for this feature:
BLAST of CF417789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
CRK36_ARATH2.399e-1636.30Cysteine-rich receptor-like protein kinase 36 OS=A... [more]
SIRK_ARATH3.134e-1631.79Senescence-induced receptor-like serine/threonine-... [more]
RLK6_ARATH3.134e-1634.53Receptor-like protein kinase At3g21340 OS=Arabidop... [more]
NORK_MEDTR3.134e-1633.57Nodulation receptor kinase OS=Medicago truncatula ... [more]
CRK8_ARATH3.134e-1635.42Cysteine-rich receptor-like protein kinase 8 OS=Ar... [more]
CRK26_ARATH3.134e-1632.21Cysteine-rich receptor-like protein kinase 26 OS=A... [more]
Y5189_ARATH4.093e-1631.43Probable LRR receptor-like protein kinase At1g5189... [more]
Y2393_ARATH4.093e-1632.87Probable receptor-like protein kinase At2g39360 OS... [more]
WAKLM_ARATH4.093e-1626.26Wall-associated receptor kinase-like 17 OS=Arabido... [more]
WAKLI_ARATH4.093e-1629.41Wall-associated receptor kinase-like 22 OS=Arabido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-719 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417789 ID=CF417789; Name=CF417789; organism=Citrus sinensis; type=EST; length=723bp
TTTTGTTGGATGAGGAGTTTGAAGCTGTTGTTGGGGACTTTGGGTTGGCT
AAACTTATGGACTACAAGGATACCCATGNCACTACGGCAGTCCGTGGCAC
CATTGGGCATATAGCTCCAGAATACCTTTCTACTGGAAAATCTTCAGAGA
AAACTGATGTCTTTGGTTATGGGATTATGCTTCTAGAGCTAATCACTGGA
CAGAGAGCCTTTGATCTTGCTCGTCTTGCAAATGATGATGATGTCATGCT
GCTTGATTGGGTGAAAGGACTTCTGAAGGAAAAGAAGTTAGAAATGCTAG
TTGACCCTGATCTCCAGAACAATTATGTGGAAGCTGAGGTGGAGCAACTT
ATCCAGGTTGCGTTGCTCTGCACTCAAGGCTCCCCTATGGACCGGCCCAA
GATGTCGGAAGTTGTTAGAATGCTTGAAGGTGATGGCTTGGCAGAGCGGT
GGGATGAGTGGCAAAAGGTGGAAGTTCTCCGCCAAGAAGTAGAATTAGCC
CCTCATCCTAATTCAGATTGGATAGTTGACTCAACAGAAAATCTTCATGC
CGTTGAGTTATCTGGTCCAAGGTGACCCTGTCACTCCTATTAGCTATAAG
TAAAGAGGAAAATTTACTACTTTTTTTTATTCCTTTTTTTAATCATAATT
TTTCTTCTTTTTTTAATTTAACGATGATATCCTGATTTCTGTAAGCCCTT
CAGCATTGTATTCATTACACTTG
back to top