CF417790

Overview
NameCF417790
Unique NameCF417790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3_BOVIN (Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3)

HSP 1 Score: 221.476 bits (563), Expect = 3.529e-57
Identity = 105/179 (58.66%), Postives = 141/179 (78.77%), Query Frame = 3
Query:   42 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG+G
Sbjct:    6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMG 184          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3_DROME (Proteasome subunit beta type-3 OS=Drosophila melanogaster GN=Prosbeta3 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 6.624e-54
Identity = 97/181 (53.59%), Postives = 134/181 (74.03%), Query Frame = 3
Query:   42 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLGRT 581
            YNG  +VAM GK+C AIA+D R G+Q QTI+TDF+++  I  R+F+GL+GL TD  T+  RL+FR  LY+ RE R+M P+ F++++S+ LYE RFGPYF +PV+AGL  +  +PFIC MD IG      DFVVAGT  E LYG CE ++KPD+EPD+LFE ++Q+++++ DRD +SG G T
Sbjct:    6 YNGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDILTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLDPKTMEPFICNMDLIGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGAT 186          

HSP 2 Score: 22.7126 bits (47), Expect = 6.624e-54
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  586 YIVTPTEIKERILKGRMD 639
            YI+   +I ER LK RMD
Sbjct:  188 YIIEKDKITERTLKTRMD 205          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3_CAEEL (Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.324e-47
Identity = 82/178 (46.07%), Postives = 126/178 (70.79%), Query Frame = 3
Query:   42 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            Y G  +VAM G  C  IASD R+G Q+ TIATD +++ K+ D++++GL+G  +D++T+ ++++FR  LY+LRE R++KP+  + ++S L Y+ RFG YF +P++AGL D +KP+IC MD+IG     +DFV  GT  E L G CE  ++ +M+PDELFE  +Q++LS ++RD  SG G
Sbjct:    6 YTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWG 183          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3_YEAST (Proteasome component PUP3 OS=Saccharomyces cerevisiae GN=PUP3 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.375e-47
Identity = 91/178 (51.12%), Postives = 131/178 (73.60%), Query Frame = 3
Query:   45 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            NG  +VAM GK+C AIA D RLG Q   ++  F++I   +  +F+G++GLATD  TL +   ++  LY+L+EER ++PETF  LVS+ LYE+RFGPYF  PV+AG++ +  KPFI   D IG  + AKDF+V+GTA + L+G CE++++P++EP++LFET+SQALL++ DRD LSG G
Sbjct:    8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFH-YGHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWG 184          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3_TRYBB (Proteasome subunit beta type-3 OS=Trypanosoma brucei brucei GN=PSB3 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.065e-45
Identity = 88/179 (49.16%), Postives = 129/179 (72.07%), Query Frame = 3
Query:   42 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDE-DKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            Y+G + +AM GK CF + SD RLG QL+TI+ +  ++  I+D + +GL+GL TD QT  Q++ FR ++Y+LREERD+  + FA+LVS++LYE RFGP+F +PVI  +  +  + ++C  D IGA    +D+V AGT  ESL+G CEA+++P +EP+ELFE  +QA+LS+ DRD LSG G
Sbjct:    6 YSGGSCLAMAGKECFVVISDNRLGEQLKTISMEVPKLHVINDGIVMGLTGLRTDQQTFAQKVNFRTEMYKLREERDINGKAFAALVSSMLYEARFGPWFVEPVIGTIDRKTGEVYLCATDLIGAPCEPEDYVCAGTCAESLHGMCEALWRPGLEPEELFEVAAQAMLSACDRDSLSGYG 184          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3_GIALA (Proteasome subunit beta type-3 OS=Giardia lamblia GN=PRSBETA3 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.809e-38
Identity = 75/180 (41.67%), Postives = 115/180 (63.89%), Query Frame = 3
Query:   39 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIAT-DFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            EYNGSAL+ + G +C A+A+D+RLG   QT+   + +RI ++     +GL+GL TD  T Y+++  +  LY L+E+R+++P   A ++S+ LY+ RFGPYF  P+IAG   + KP++  MD+IG  +   +F +AGTA + L G CE   KPDM  DE+   + Q + S+ +RD  SG G
Sbjct:    6 EYNGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDVLTTYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAMDTIGCLDDCTNFQIAGTASDFLLGLCETHVKPDMSEDEILPLMEQIIRSATNRDAYSGWG 185          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.953e-17
Identity = 56/178 (31.46%), Postives = 90/178 (50.56%), Query Frame = 3
Query:   42 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            Y G+  V +V K+   +A+++R  +     +   ++I +I DR+ +  +G   D+Q L + +     LY++R ER       A+L S LL   R+ PY  Q +I G+  E K  I ++D IG     KD V  G+   + YG  E  F P++  DE  E   +A+ S++ RD  SG G
Sbjct:    9 YKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS-IYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDG 185          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 47/176 (26.70%), Postives = 89/176 (50.57%), Query Frame = 3
Query:   48 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            G+  V ++  +   +A+D+R  +       + +++ KI D + + ++G   D+Q + + L+   KLY++R  R++ P   A+L+S +L+  R  P+  Q +I G    +   + ++D +G     K F   G+     YG  EA +  DM  +E  +    AL S+++RD  SG G
Sbjct:    6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNG 181          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.558e-15
Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 3
Query:   45 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKE 416
            NG   VA+ G +   IA+D R+      ++ D+ +I K+ DR  +  SG   D + L + L  RH +YQ +  + M     A L+S  LY KRF PY+   V+ GL +E K  + T D++G+ E
Sbjct:   14 NGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAVGSYE 137          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 56/181 (30.94%), Postives = 85/181 (46.96%), Query Frame = 3
Query:   39 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLGRT 581
            E NG   VA+ G +   +A+D RL V    +  D  +I ++ D+  +  SG   D + L++ L  R  LYQ +  + M     A L+S  LY KRF PY+   V+ GL  E K  + T D++G+ E           G S  G   A+  P +  D   ++ S  LL +  RD ++ L  T
Sbjct:   10 ENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTYDAVGSYE---------RTGYSAQGTGSALIMPVL--DNQLKSPSPLLLPA--RDAVTPLSET 177          
The following BLAST results are available for this feature:
BLAST of CF417790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
PSB3_BOVIN3.529e-5758.66Proteasome subunit beta type-3 OS=Bos taurus GN=PS... [more]
PSB3_DROME6.624e-5453.59Proteasome subunit beta type-3 OS=Drosophila melan... [more]
PSB3_CAEEL4.324e-4746.07Proteasome subunit beta type-3 OS=Caenorhabditis e... [more]
PSB3_YEAST7.375e-4751.12Proteasome component PUP3 OS=Saccharomyces cerevis... [more]
PSB3_TRYBB1.065e-4549.16Proteasome subunit beta type-3 OS=Trypanosoma bruc... [more]
PSB3_GIALA2.809e-3841.67Proteasome subunit beta type-3 OS=Giardia lamblia ... [more]
PSMB_ARCFU7.953e-1731.46Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSMB_METJA1.148e-1526.70Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSB1_ARATH2.558e-1534.68Proteasome subunit beta type-1 OS=Arabidopsis thal... [more]
PSB1_ORYSJ4.364e-1530.94Proteasome subunit beta type-1 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-720 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417790 ID=CF417790; Name=CF417790; organism=Citrus sinensis; type=EST; length=705bp
CATCAAGTCACTCTACAATTATAATTATGTCTATCACTGAGTACAATGGG
AGCGCACTCGTTGCGATGGTCGGAAAGAACTGCTTTGCCATTGCCAGCGA
TCGGCGCCTCGGCGTTCAGCTTCAGACAATAGCCACTGATTTTCAGCGAA
TTTCCAAAATTCACGATCGCCTTTTTATCGGCCTCTCTGGACTCGCCACT
GATTCCCAGACCTTGTATCAAAGGCTGGTGTTTCGTCACAAATTGTATCA
GCTGCGAGAGGAAAGGGACATGAAGCCTGAAACTTTTGCTAGCTTAGTCT
CTGCTTTGCTTTATGAGAAAAGGTTTGGCCCTTACTTCTGTCAACCTGTT
ATTGCTGGATTGAGTGATGAAGACAAGCCCTTTATCTGCACAATGGACTC
AATTGGAGCCAAGGAGCTTGCAAAAGATTTTGTTGTTGCTGGAACTGCTG
GAGAGTCTCTTTATGGTGCCTGTGAGGCAATGTTCAAGCCTGATATGGAA
CCCGATGAGTTGTTTGAAACTGTATCTCAAGCTTTGTTATCATCTGTTGA
CCGTGACTGTTTGAGTGGGTTGGGGAGGACATGTCTACATTGTAACACCA
ACTGAAATAAAGGAAAGAATCTTGAAGGGAAGGATGGATTGATCTATAAC
TGCAGTGCTGAAAGCCACCCCTTCTGTTGCGTTCACTCTTCAGTATTTTT
TAATT
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