CF417831
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 2.501e-46 Identity = 92/212 (43.40%), Postives = 145/212 (68.40%), Query Frame = 3 Query: 9 FWGLMTLSTFG-NLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCM----LGPGNFSGDELLSWCLRRPSS 629 +WGL LS+ G NL+++T E+ F + + +GL+L + LIGN++ +L +TT++ + M++K R+ E WM R LP+ R+R+R YE+ +W RGVDE ++SNLP+ LRRDIK HLCL L+ +VP+F+ MD+ +L+ +CDR++ +++T+ I +EGDPV MLF++RG L + I N ++ + LG G+F G+ELL+W L SS Sbjct: 360 WWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLT--ITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSS 569
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2) HSP 1 Score: 182.57 bits (462), Expect = 1.621e-45 Identity = 86/213 (40.38%), Postives = 141/213 (66.20%), Query Frame = 3 Query: 9 FWGLMTLSTFGNLESTTEWL-EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPSSKGY 638 +WGL LS G +T++++ E++F + + SGL+L +LIGN++ +L +TT +++ M+++ R+ E WM R LP R+R+R YE+ +W RGV+E ++ NLP+ LRRDIK H CLDL+++VPLF+ MD+ +L+ +CD++K +++T+ +EGDPV+ MLFV+RG L S+ + L P +F G++LL+W L SS + Sbjct: 348 WWGLRNLSALGQNLNTSKFVGEIIFAVSICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSHF 560
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2) HSP 1 Score: 181.415 bits (459), Expect = 3.612e-45 Identity = 88/213 (41.31%), Postives = 141/213 (66.20%), Query Frame = 3 Query: 9 FWGLMTLSTFGNLESTTEWL-EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPSSKGY 638 +WGL LS G T++++ E++F I + SGL+L +LIGN++ +L +TT +++ M+++ R+ E WM R LP+ R+R+R YE+ RW RGV+E ++ NLP+ LRRDIK HLCLDL+++VPLF+ MD+ +L+ +CDR++ +++T+ + +EGDPV MLFV+RG L S+ + + L +F G++LL W L SS + Sbjct: 347 WWGLRNLSALGQNLQTSKFVGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHF 559
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2) HSP 1 Score: 172.17 bits (435), Expect = 2.191e-42 Identity = 88/211 (41.71%), Postives = 141/211 (66.82%), Query Frame = 3 Query: 9 FWGLMTLSTFG-NLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPSSK 632 +WGL LS G NL+++ E++F I++ SGL+L +LIGN++ +L +TT + + M++K R+ E WM R LP R+R+R YE+ +W +GV+E ++S+LP+ LR+DIK HLCL L+++VP FQ MDD +L+ +C R+K++++T+ I +EG+PV+ MLF++RG+L S+ + L G+F GD LL+W L SS+ Sbjct: 351 WWGLRNLSALGQNLKTSAFEGEIIFAIVICISGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPDDLRKRIRKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLVAGDFCGD-LLTWALDPLSSQ 560
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 4.882e-42 Identity = 89/206 (43.20%), Postives = 133/206 (64.56%), Query Frame = 3 Query: 6 IFWGLMTLSTFGNLESTTEWL-EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCL 614 ++WGL LS++G +T+ +L E +F I + GL+L T+LIGN++ L + + + + ++K R+ E WMR RQLP ++RVR + + +W A RGVDE ++ +LP LRR+I+ HLCL LVR+VP F MDD +L+ IC + S + T G I +EGDPV MLFV+RG ++SS + + L PG+F G+ELL+W L Sbjct: 322 LWWGLRNLSSYGQNITTSVYLGETLFCITICIFGLILFTLLIGNMQSSLQSMSVRVEEWRVKRRDTEEWMRHRQLPPELQERVRRFVQYKWLATRGVDEESILHSLPTDLRREIQRHLCLSLVRRVPFFSQMDDQLLDAICGCLVSSLSTAGTYIFREGDPVNEMLFVIRGQIESSTTNGGRSGFFNSTTLRPGDFCGEELLTWAL 527
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.164e-41 Identity = 84/206 (40.78%), Postives = 132/206 (64.08%), Query Frame = 3 Query: 6 IFWGLMTLSTFG-NLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQI--LHNNIKSCCMLGPGNFSGDELLSWCL 614 ++WGL LS++G +L ++T E +F+ + +GL+ + LIGN++ +L +TT++ +++ R+ E WMR RQLP ++RVR + + +W RGVDE ++ LP LRR I+ HLCL LVR+VP F MDD +L+ IC+R+ + TK + +EGDPV MLF++RG ++SS + + L PG+F G+ELL+W L Sbjct: 330 LWWGLRNLSSYGQSLAASTLSSETIFSCFICVAGLVFFSHLIGNVQNYLQSTTARLDEWRVRRRDTEEWMRHRQLPDELQERVRRFVQYKWLTTRGVDEEAILRALPLDLRRQIQRHLCLALVRRVPFFAQMDDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQMESSTTDGGRSGFFNSITLRPGDFCGEELLTWAL 535
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 3.389e-35 Identity = 79/211 (37.44%), Postives = 133/211 (63.03%), Query Frame = 3 Query: 9 FWGLMTLSTFG-NLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPSSK 632 +WGL +S G NLE++ E+ F II+ SGLLL +LIGN++ +L ++T++ M+ K R+ E WM R++P+ ++R+R +E +W +G +E ++ +LP+ LR + K +L L L+++VPL Q MDD +L+ +C R+K++ +T+ I +EG+PV+ MLF++RG+L S+ + L G+ GD LL+W L SS+ Sbjct: 309 WWGLRNISALGQNLETSNSAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKKRDTEKWMSYREIPEYLKERIRRFEDYKWRRTKGTEEEALLRSLPKDLRLETKRYLFLKLLKKVPLLQAMDDQLLDALCARLKTVHYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLIAGDSCGD-LLTWALYSLSSQ 518
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 7.549e-35 Identity = 82/211 (38.86%), Postives = 128/211 (60.66%), Query Frame = 3 Query: 9 FWGLMTLSTFG-NLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDD-LVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNN--IKSCCMLGPGNFSGDELLSWCLRRPSS 629 +WGL +S G NLE++ E+ F II+ SGLLL +LIGN++ +L ++T++ M+ K R+ E WM R +P+ ++R+R +E +W +G +E ++ +LP+ LR + K +L LD++++VP MDD +LE +CDRVKS+ + I +EG PV+ ML V RG L+S+ H +CC L G+ G ELL R P+S Sbjct: 309 WWGLRNISALGQNLETSNSAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKRRDTEKWMSYRVIPEYLKERIRRFEDYKWRETKGTEEEALLRSLPKDLRLETKRYLYLDMLKRVPWLNIMDDGWLLEAVCDRVKSVFYLANSFIVREGHPVEEMLIVTRGKLKSTTGSHEMGVRNNCCDLQDGDICG-ELLFNGSRLPTS 518
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.090e-33 Identity = 79/208 (37.98%), Postives = 122/208 (58.65%), Query Frame = 3 Query: 6 IFWGLMTLSTFGNLESTTEWL-EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPS 626 +FWG +ST + + +L EV F + ++ GLLL +LIGN++ FL A + M L+ R++E WM R+LP G R+RVR ER WAA RGV+E + N+P+ L+RDI+ HL +++V +F MD+ +L+ I +R+K + + G V++M+F+VRG ++S S L G+ G+ELL+WCL R S Sbjct: 467 LFWGFQQISTLAGNQVPSYFLGEVFFTMGIIGLGLLLFALLIGNMQNFLQALGKRNLEMTLRRRDVEQWMSHRRLPDGIRRRVREAERFNWAATRGVNEELLFENMPDDLQRDIRRHL-FKFLKKVRIFSLMDEPILDAIRERLKQRTYIGSSTVLHRGGLVEKMVFIVRGEMESI----GEDGSVLPLYEGDVCGEELLTWCLERSS 669
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG19_ARATH (Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=2 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.428e-33 Identity = 78/213 (36.62%), Postives = 123/213 (57.75%), Query Frame = 3 Query: 6 IFWGLMTLSTF-GNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPSSKGYR 641 ++WG +ST GNL + EV F + ++ GLLL LIGN+ FL + ++ M L+ R++E WM R+LP+ R+RVR ER WAA RGV+E + N+P+ L+RDI+ HL +++V +F MD+ VL++I +R+K + + + V++M+F+VRG ++S S L G+ G+ELL+WCL + G R Sbjct: 434 LYWGFQQISTLAGNLSPSYSVGEVFFTMGIIGLGLLLFARLIGNMHNFLQSLDRRRMEMMLRKRDVEQWMSHRRLPEDIRKRVREVERYTWAATRGVNEELLFENMPDDLQRDIRRHL-FKFLKKVRIFSLMDESVLDSIRERLKQRTYIRSSTVLHHRGLVEKMVFIVRGEMESI----GEDGSVLPLSEGDVCGEELLTWCLSSINPDGTR 641 The following BLAST results are available for this feature:
BLAST of CF417831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417831 ID=CF417831; Name=CF417831; organism=Citrus sinensis; type=EST; length=667bpback to top |