CF417831

Overview
NameCF417831
Unique NameCF417831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.501e-46
Identity = 92/212 (43.40%), Postives = 145/212 (68.40%), Query Frame = 3
Query:    9 FWGLMTLSTFG-NLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCM----LGPGNFSGDELLSWCLRRPSS 629
            +WGL  LS+ G NL+++T   E+ F + +  +GL+L + LIGN++ +L +TT++ + M++K R+ E WM  R LP+  R+R+R YE+ +W   RGVDE  ++SNLP+ LRRDIK HLCL L+ +VP+F+ MD+ +L+ +CDR++ +++T+   I +EGDPV  MLF++RG L +  I  N  ++  +    LG G+F G+ELL+W L   SS
Sbjct:  360 WWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLT--ITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSS 569          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.621e-45
Identity = 86/213 (40.38%), Postives = 141/213 (66.20%), Query Frame = 3
Query:    9 FWGLMTLSTFGNLESTTEWL-EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPSSKGY 638
            +WGL  LS  G   +T++++ E++F + +  SGL+L  +LIGN++ +L +TT +++ M+++ R+ E WM  R LP   R+R+R YE+ +W   RGV+E  ++ NLP+ LRRDIK H CLDL+++VPLF+ MD+ +L+ +CD++K +++T+     +EGDPV+ MLFV+RG L S+          +   L P +F G++LL+W L   SS  +
Sbjct:  348 WWGLRNLSALGQNLNTSKFVGEIIFAVSICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSHF 560          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.612e-45
Identity = 88/213 (41.31%), Postives = 141/213 (66.20%), Query Frame = 3
Query:    9 FWGLMTLSTFGNLESTTEWL-EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPSSKGY 638
            +WGL  LS  G    T++++ E++F I +  SGL+L  +LIGN++ +L +TT +++ M+++ R+ E WM  R LP+  R+R+R YE+ RW   RGV+E  ++ NLP+ LRRDIK HLCLDL+++VPLF+ MD+ +L+ +CDR++ +++T+   + +EGDPV  MLFV+RG L S+      +   +   L   +F G++LL W L   SS  +
Sbjct:  347 WWGLRNLSALGQNLQTSKFVGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHF 559          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.191e-42
Identity = 88/211 (41.71%), Postives = 141/211 (66.82%), Query Frame = 3
Query:    9 FWGLMTLSTFG-NLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPSSK 632
            +WGL  LS  G NL+++    E++F I++  SGL+L  +LIGN++ +L +TT + + M++K R+ E WM  R LP   R+R+R YE+ +W   +GV+E  ++S+LP+ LR+DIK HLCL L+++VP FQ MDD +L+ +C R+K++++T+   I +EG+PV+ MLF++RG+L S+          +   L  G+F GD LL+W L   SS+
Sbjct:  351 WWGLRNLSALGQNLKTSAFEGEIIFAIVICISGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPDDLRKRIRKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLVAGDFCGD-LLTWALDPLSSQ 560          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.882e-42
Identity = 89/206 (43.20%), Postives = 133/206 (64.56%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWL-EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCL 614
            ++WGL  LS++G   +T+ +L E +F I +   GL+L T+LIGN++  L + + + +  ++K R+ E WMR RQLP   ++RVR + + +W A RGVDE  ++ +LP  LRR+I+ HLCL LVR+VP F  MDD +L+ IC  + S + T G  I +EGDPV  MLFV+RG ++SS      +   +   L PG+F G+ELL+W L
Sbjct:  322 LWWGLRNLSSYGQNITTSVYLGETLFCITICIFGLILFTLLIGNMQSSLQSMSVRVEEWRVKRRDTEEWMRHRQLPPELQERVRRFVQYKWLATRGVDEESILHSLPTDLRREIQRHLCLSLVRRVPFFSQMDDQLLDAICGCLVSSLSTAGTYIFREGDPVNEMLFVIRGQIESSTTNGGRSGFFNSTTLRPGDFCGEELLTWAL 527          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.164e-41
Identity = 84/206 (40.78%), Postives = 132/206 (64.08%), Query Frame = 3
Query:    6 IFWGLMTLSTFG-NLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQI--LHNNIKSCCMLGPGNFSGDELLSWCL 614
            ++WGL  LS++G +L ++T   E +F+  +  +GL+  + LIGN++ +L +TT++    +++ R+ E WMR RQLP   ++RVR + + +W   RGVDE  ++  LP  LRR I+ HLCL LVR+VP F  MDD +L+ IC+R+   + TK   + +EGDPV  MLF++RG ++SS      +   +   L PG+F G+ELL+W L
Sbjct:  330 LWWGLRNLSSYGQSLAASTLSSETIFSCFICVAGLVFFSHLIGNVQNYLQSTTARLDEWRVRRRDTEEWMRHRQLPDELQERVRRFVQYKWLTTRGVDEEAILRALPLDLRRQIQRHLCLALVRRVPFFAQMDDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQMESSTTDGGRSGFFNSITLRPGDFCGEELLTWAL 535          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.389e-35
Identity = 79/211 (37.44%), Postives = 133/211 (63.03%), Query Frame = 3
Query:    9 FWGLMTLSTFG-NLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPSSK 632
            +WGL  +S  G NLE++    E+ F II+  SGLLL  +LIGN++ +L ++T++   M+ K R+ E WM  R++P+  ++R+R +E  +W   +G +E  ++ +LP+ LR + K +L L L+++VPL Q MDD +L+ +C R+K++ +T+   I +EG+PV+ MLF++RG+L S+          +   L  G+  GD LL+W L   SS+
Sbjct:  309 WWGLRNISALGQNLETSNSAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKKRDTEKWMSYREIPEYLKERIRRFEDYKWRRTKGTEEEALLRSLPKDLRLETKRYLFLKLLKKVPLLQAMDDQLLDALCARLKTVHYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLIAGDSCGD-LLTWALYSLSSQ 518          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.549e-35
Identity = 82/211 (38.86%), Postives = 128/211 (60.66%), Query Frame = 3
Query:    9 FWGLMTLSTFG-NLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDD-LVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNN--IKSCCMLGPGNFSGDELLSWCLRRPSS 629
            +WGL  +S  G NLE++    E+ F II+  SGLLL  +LIGN++ +L ++T++   M+ K R+ E WM  R +P+  ++R+R +E  +W   +G +E  ++ +LP+ LR + K +L LD++++VP    MDD  +LE +CDRVKS+ +     I +EG PV+ ML V RG L+S+   H      +CC L  G+  G ELL    R P+S
Sbjct:  309 WWGLRNISALGQNLETSNSAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKRRDTEKWMSYRVIPEYLKERIRRFEDYKWRETKGTEEEALLRSLPKDLRLETKRYLYLDMLKRVPWLNIMDDGWLLEAVCDRVKSVFYLANSFIVREGHPVEEMLIVTRGKLKSTTGSHEMGVRNNCCDLQDGDICG-ELLFNGSRLPTS 518          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.090e-33
Identity = 79/208 (37.98%), Postives = 122/208 (58.65%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWL-EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPS 626
            +FWG   +ST    +  + +L EV F + ++  GLLL  +LIGN++ FL A   +   M L+ R++E WM  R+LP G R+RVR  ER  WAA RGV+E  +  N+P+ L+RDI+ HL    +++V +F  MD+ +L+ I +R+K   +     +   G  V++M+F+VRG ++S         S   L  G+  G+ELL+WCL R S
Sbjct:  467 LFWGFQQISTLAGNQVPSYFLGEVFFTMGIIGLGLLLFALLIGNMQNFLQALGKRNLEMTLRRRDVEQWMSHRRLPDGIRRRVREAERFNWAATRGVNEELLFENMPDDLQRDIRRHL-FKFLKKVRIFSLMDEPILDAIRERLKQRTYIGSSTVLHRGGLVEKMVFIVRGEMESI----GEDGSVLPLYEGDVCGEELLTWCLERSS 669          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG19_ARATH (Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.428e-33
Identity = 78/213 (36.62%), Postives = 123/213 (57.75%), Query Frame = 3
Query:    6 IFWGLMTLSTF-GNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPSSKGYR 641
            ++WG   +ST  GNL  +    EV F + ++  GLLL   LIGN+  FL +   ++  M L+ R++E WM  R+LP+  R+RVR  ER  WAA RGV+E  +  N+P+ L+RDI+ HL    +++V +F  MD+ VL++I +R+K   + +   +      V++M+F+VRG ++S         S   L  G+  G+ELL+WCL   +  G R
Sbjct:  434 LYWGFQQISTLAGNLSPSYSVGEVFFTMGIIGLGLLLFARLIGNMHNFLQSLDRRRMEMMLRKRDVEQWMSHRRLPEDIRKRVREVERYTWAATRGVNEELLFENMPDDLQRDIRRHL-FKFLKKVRIFSLMDESVLDSIRERLKQRTYIRSSTVLHHRGLVEKMVFIVRGEMESI----GEDGSVLPLSEGDVCGEELLTWCLSSINPDGTR 641          
The following BLAST results are available for this feature:
BLAST of CF417831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CNGC1_ARATH2.501e-4643.40Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNG13_ARATH1.621e-4540.38Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNG10_ARATH3.612e-4541.31Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNGC3_ARATH2.191e-4241.71Probable cyclic nucleotide-gated ion channel 3 OS=... [more]
CNG18_ARATH4.882e-4243.20Putative cyclic nucleotide-gated ion channel 18 OS... [more]
CNG16_ARATH3.164e-4140.78Probable cyclic nucleotide-gated ion channel 16 OS... [more]
CNG11_ARATH3.389e-3537.44Cyclic nucleotide-gated ion channel 11 OS=Arabidop... [more]
CNG12_ARATH7.549e-3538.86Probable cyclic nucleotide-gated ion channel 12 OS... [more]
CNG20_ARATH1.090e-3337.98Probable cyclic nucleotide-gated ion channel 20, c... [more]
CNG19_ARATH2.428e-3336.62Putative cyclic nucleotide-gated ion channel 19 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-761 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417831 ID=CF417831; Name=CF417831; organism=Citrus sinensis; type=EST; length=667bp
TTCCCATCTTTTGGGGCTTGATGACTCTCAGCACTTTTGGGAATCTGGAG
AGCACAACAGAATGGCTAGAAGTAGTTTTCAACATCATCGTTTTAACAAG
TGGGCTCCTTCTAGTCACCATGTTGATTGGAAATATAAAGGTGTTCTTGC
ATGCAACAACATCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATA
GAATGGTGGATGAGGAAAAGGCAATTGCCTCAAGGGTTCAGGCAGCGGGT
TCGCAACTACGAGCGGCAGCGATGGGCGGCAATGCGCGGTGTTGATGAGT
GTGAGATGATCAGTAACCTCCCTGAGGGCTTAAGAAGGGACATCAAGTAT
CATCTCTGCTTGGACTTAGTAAGACAGGTACCATTGTTCCAACATATGGA
TGATTTGGTTTTGGAGAATATTTGTGATCGAGTGAAGTCTCTCATATTTA
CAAAGGGTGAAGTGATAACAAAAGAGGGTGACCCAGTACAAAGAATGCTA
TTTGTAGTAAGAGGGCATCTTCAAAGCAGCCAAATTCTCCACAACAACAT
CAAAAGTTGCTGCATGTTGGGCCCTGGAAACTTCAGTGGCGATGAGCTTC
TATCCTGGTGCCTTCGGAGACCTTCATCGAAAGGCTACCGCCATCTTCAT
CTACTTTAATAACCCTG
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