CF417831
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGB3_MOUSE (Cyclic nucleotide-gated cation channel beta-3 OS=Mus musculus GN=Cngb3 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18 Identity = 48/172 (27.91%), Postives = 89/172 (51.74%), Query Frame = 3 Query: 9 FWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQ 524 +W + TL T G L E+VF + SG+ + + LIG ++ + A T+ + Q M +I +M K +PQ + RVR + W + R +DE ++ NLP ++ I + ++ +V LF+ D ++ ++ R+KS I+ G+ + K+G+ + M + G +Q Sbjct: 391 YWAVRTLITIGGLPEPQTSFEIVFQFLNFFSGVFVFSSLIGQMRDVIGAATANQNYFQACMDHIIAYMNKYSIPQSVQYRVRTWLEYTWNSQRILDESNLLENLPTAMQLSIALDINFSIIDKVELFKGCDTQMIYDLLLRLKSTIYLPGDFVCKKGEIGKEMYIIKHGEVQ 562
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA3_BOVIN (Cyclic nucleotide-gated cation channel alpha-3 OS=Bos taurus GN=CNGA3 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.764e-18 Identity = 50/196 (25.51%), Postives = 105/196 (53.57%), Query Frame = 3 Query: 6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 ++W +TL+T G + E +F +I G+L+ ++GN+ + + + Q K+ +I+ +M+ R++ + RV + WA + VDE E++ +LP+ L+ +I ++ LD +R+V +FQ + +L + +++ +F+ G+ I K+GD + M + G L + + + I +LG G++ G+ Sbjct: 375 LYWSTLTLTTIGETPPPVKDEEYLFVVIDFLVGVLIFATIVGNVGSMISNMNASRAEFQAKIDSIKQYMQFRKVTKDLETRVIRWFDYLWANKKTVDEKEVLKSLPDKLKAEIAINVHLDTLRKVRIFQDCEAGLLVELVLKLRPAVFSPGDYICKKGDIGREMYIIKEGKL--AVVAEDGITQFVVLGDGSYFGE 568
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA3_MOUSE (Cyclic nucleotide-gated cation channel alpha-3 OS=Mus musculus GN=Cnga3 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17 Identity = 47/196 (23.98%), Postives = 104/196 (53.06%), Query Frame = 3 Query: 6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 ++W +TL+T G + E +F +I G+L+ ++GN+ + + + Q K+ +++ +M+ R++ + RV + WA + VDE E++ NLP+ L+ +I ++ LD +++V +FQ + +L + +++ +F+ G+ I K+GD + M + G L + + + + +L G++ G+ Sbjct: 297 LYWSTLTLTTIGETPPPVKDEEYLFVVIDFLVGILIFATIVGNVGSMISNMNAPRVEFQAKIDSVKQYMQFRKVTKDLETRVIRWFDYLWANRKTVDEKEVLKNLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGREMYIIKEGKL--AVVADDGVTQFVVLSDGSYFGE 490
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG1_CHICK (Cyclic nucleotide-gated channel cone photoreceptor subunit alpha OS=Gallus gallus PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17 Identity = 49/196 (25.00%), Postives = 102/196 (52.04%), Query Frame = 3 Query: 6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 ++W +TL+T G + E +F +I G+L+ ++GN+ + + + Q K+ +I+ +M R++ + RV + W + VDE E++ NLP+ L+ +I ++ LD +++V +FQ + +L + ++K +F+ G+ I K+GD + M + G L + + + I +L G++ G+ Sbjct: 398 LYWSTLTLTTIGETPPPVKDEEYLFVVIDFLVGVLIFATIVGNVGSMISNMNASRAEFQAKVDSIKQYMHFRKVTKDLEARVIKWFDYLWTNKKTVDEKEVLKNLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLIELVLKLKPTVFSPGDYICKKGDIGREMYIIKEGKL--AVVADDGITQFVVLSDGSYFGE 591
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH3_RAT (Potassium voltage-gated channel subfamily H member 3 OS=Rattus norvegicus GN=Kcnh3 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.271e-17 Identity = 55/200 (27.50%), Postives = 105/200 (52.50%), Query Frame = 3 Query: 6 IFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599 +++ L +L++ FGN+ + T+ E +F+I + G L+ ++ GN+ + +++ + R++ ++R ++P+ +QR+ Y + WA G+D E++ +LP+ LR DI HL + V Q+PLF+ L + ++ T GE + +GD +Q + FV G S ++L +LG G+ G EL Sbjct: 459 LYFALSSLTSVGFGNVSANTD-TEKIFSICTMLIGALMHAVVFGNVTAIIQRMYARRFLYHSRTRDLRDYIRIHRIPKPLKQRMLEYFQATWAVNNGIDTTELLQSLPDELRADIAMHLHKE-VLQLPLFEAASRGCLRALSLALRPAFCTPGEYLIHQGDALQALYFVCSG---SMEVLKGG-TVLAILGKGDLIGCEL 652
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH3_MOUSE (Potassium voltage-gated channel subfamily H member 3 OS=Mus musculus GN=Kcnh3 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.271e-17 Identity = 55/200 (27.50%), Postives = 105/200 (52.50%), Query Frame = 3 Query: 6 IFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599 +++ L +L++ FGN+ + T+ E +F+I + G L+ ++ GN+ + +++ + R++ ++R ++P+ +QR+ Y + WA G+D E++ +LP+ LR DI HL + V Q+PLF+ L + ++ T GE + +GD +Q + FV G S ++L +LG G+ G EL Sbjct: 459 LYFALSSLTSVGFGNVSANTD-TEKIFSICTMLIGALMHAVVFGNVTAIIQRMYARRFLYHSRTRDLRDYIRIHRIPKPLKQRMLEYFQATWAVNNGIDTTELLQSLPDELRADIAMHLHKE-VLQLPLFEAASRGCLRALSLALRPAFCTPGEYLIHQGDALQALYFVCSG---SMEVLKGG-TVLAILGKGDLIGCEL 652
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH3_HUMAN (Potassium voltage-gated channel subfamily H member 3 OS=Homo sapiens GN=KCNH3 PE=2 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 9.271e-17 Identity = 55/200 (27.50%), Postives = 105/200 (52.50%), Query Frame = 3 Query: 6 IFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599 +++ L +L++ FGN+ + T+ E +F+I + G L+ ++ GN+ + +++ + R++ ++R ++P+ +QR+ Y + WA G+D E++ +LP+ LR DI HL + V Q+PLF+ L + ++ T GE + +GD +Q + FV G S ++L +LG G+ G EL Sbjct: 456 LYFALSSLTSVGFGNVSANTD-TEKIFSICTMLIGALMHAVVFGNVTAIIQRMYARRFLYHSRTRDLRDYIRIHRIPKPLKQRMLEYFQATWAVNNGIDTTELLQSLPDELRADIAMHLHKE-VLQLPLFEAASRGCLRALSLALRPAFCTPGEYLIHQGDALQALYFVCSG---SMEVLKGG-TVLAILGKGDLIGCEL 649
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA3_HUMAN (Cyclic nucleotide-gated cation channel alpha-3 OS=Homo sapiens GN=CNGA3 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16 Identity = 46/196 (23.47%), Postives = 104/196 (53.06%), Query Frame = 3 Query: 6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 ++W +TL+T G + E +F ++ G+L+ ++GN+ + + + Q K+ +I+ +M+ R++ + RV + WA + VDE E++ +LP+ L+ +I ++ LD +++V +FQ + +L + +++ +F+ G+ I K+GD + M + G L + + + + +L G++ G+ Sbjct: 356 LYWSTLTLTTIGETPPPVKDEEYLFVVVDFLVGVLIFATIVGNVGSMISNMNASRAEFQAKIDSIKQYMQFRKVTKDLETRVIRWFDYLWANKKTVDEKEVLKSLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGKEMYIINEGKL--AVVADDGVTQFVVLSDGSYFGE 549
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH4_HUMAN (Potassium voltage-gated channel subfamily H member 4 OS=Homo sapiens GN=KCNH4 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.065e-16 Identity = 52/193 (26.94%), Postives = 102/193 (52.85%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599 +T FGN+ + T+ E +F+I + G L+ ++ GN+ + S++ +M++++ ++R +LP+ +QR+ Y + WA G+D E++ + P+ LR DI HL +++ Q+PLF L + +K+ GE + + GD +Q +V G L ++L +N+ +LG G+ G ++ Sbjct: 437 LTSVGFGNVCANTD-AEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYHSRMKDLKDFIRVHRLPRPLKQRMLEYFQTTWAVNSGIDANELLRDFPDELRADIAMHLNREIL-QLPLFGAASRGCLRALSLHIKTSFCAPGEYLLRRGDALQAHYYVCSGSL---EVLRDNM-VLAILGKGDLIGADI 623
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGB3_CANFA (Cyclic nucleotide-gated cation channel beta-3 OS=Canis familiaris GN=CNGB3 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16 Identity = 42/172 (24.42%), Postives = 91/172 (52.91%), Query Frame = 3 Query: 9 FWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQ 524 +W + TL T G L E+VF ++ SG+ + + LIG ++ + A T+ + ++ M + +M +P+ + RVR + W + R +DE +++ LP ++ + + L ++ +V LF+ D ++ ++ R+KS ++ G+ + K+G+ + M + +G +Q Sbjct: 394 YWAVRTLITIGGLPEPQTSFEIVFQLLNFFSGVFVFSSLIGQMQDVIGAATANQNNFRISMDHTISYMNTYSIPKNVQNRVRTWYEYTWDSQRMLDESDLLCTLPVTMQLALTVDVNLSIISKVELFKGCDTQMIYDMLLRLKSTVYLPGDFVCKKGEIGKEMYIIKQGEVQ 565 The following BLAST results are available for this feature:
BLAST of CF417831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417831 ID=CF417831; Name=CF417831; organism=Citrus sinensis; type=EST; length=667bpback to top |