CF417831

Overview
NameCF417831
Unique NameCF417831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGB3_MOUSE (Cyclic nucleotide-gated cation channel beta-3 OS=Mus musculus GN=Cngb3 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 48/172 (27.91%), Postives = 89/172 (51.74%), Query Frame = 3
Query:    9 FWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQ 524
            +W + TL T G L       E+VF  +   SG+ + + LIG ++  + A T+ +   Q  M +I  +M K  +PQ  + RVR +    W + R +DE  ++ NLP  ++  I   +   ++ +V LF+  D  ++ ++  R+KS I+  G+ + K+G+  + M  +  G +Q
Sbjct:  391 YWAVRTLITIGGLPEPQTSFEIVFQFLNFFSGVFVFSSLIGQMRDVIGAATANQNYFQACMDHIIAYMNKYSIPQSVQYRVRTWLEYTWNSQRILDESNLLENLPTAMQLSIALDINFSIIDKVELFKGCDTQMIYDLLLRLKSTIYLPGDFVCKKGEIGKEMYIIKHGEVQ 562          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA3_BOVIN (Cyclic nucleotide-gated cation channel alpha-3 OS=Bos taurus GN=CNGA3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.764e-18
Identity = 50/196 (25.51%), Postives = 105/196 (53.57%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            ++W  +TL+T G      +  E +F +I    G+L+   ++GN+   +    + +   Q K+ +I+ +M+ R++ +    RV  +    WA  + VDE E++ +LP+ L+ +I  ++ LD +R+V +FQ  +  +L  +  +++  +F+ G+ I K+GD  + M  +  G L  + +  + I    +LG G++ G+
Sbjct:  375 LYWSTLTLTTIGETPPPVKDEEYLFVVIDFLVGVLIFATIVGNVGSMISNMNASRAEFQAKIDSIKQYMQFRKVTKDLETRVIRWFDYLWANKKTVDEKEVLKSLPDKLKAEIAINVHLDTLRKVRIFQDCEAGLLVELVLKLRPAVFSPGDYICKKGDIGREMYIIKEGKL--AVVAEDGITQFVVLGDGSYFGE 568          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA3_MOUSE (Cyclic nucleotide-gated cation channel alpha-3 OS=Mus musculus GN=Cnga3 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 47/196 (23.98%), Postives = 104/196 (53.06%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            ++W  +TL+T G      +  E +F +I    G+L+   ++GN+   +    + +   Q K+ +++ +M+ R++ +    RV  +    WA  + VDE E++ NLP+ L+ +I  ++ LD +++V +FQ  +  +L  +  +++  +F+ G+ I K+GD  + M  +  G L  + +  + +    +L  G++ G+
Sbjct:  297 LYWSTLTLTTIGETPPPVKDEEYLFVVIDFLVGILIFATIVGNVGSMISNMNAPRVEFQAKIDSVKQYMQFRKVTKDLETRVIRWFDYLWANRKTVDEKEVLKNLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGREMYIIKEGKL--AVVADDGVTQFVVLSDGSYFGE 490          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG1_CHICK (Cyclic nucleotide-gated channel cone photoreceptor subunit alpha OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 49/196 (25.00%), Postives = 102/196 (52.04%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            ++W  +TL+T G      +  E +F +I    G+L+   ++GN+   +    + +   Q K+ +I+ +M  R++ +    RV  +    W   + VDE E++ NLP+ L+ +I  ++ LD +++V +FQ  +  +L  +  ++K  +F+ G+ I K+GD  + M  +  G L  + +  + I    +L  G++ G+
Sbjct:  398 LYWSTLTLTTIGETPPPVKDEEYLFVVIDFLVGVLIFATIVGNVGSMISNMNASRAEFQAKVDSIKQYMHFRKVTKDLEARVIKWFDYLWTNKKTVDEKEVLKNLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLIELVLKLKPTVFSPGDYICKKGDIGREMYIIKEGKL--AVVADDGITQFVVLSDGSYFGE 591          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH3_RAT (Potassium voltage-gated channel subfamily H member 3 OS=Rattus norvegicus GN=Kcnh3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.271e-17
Identity = 55/200 (27.50%), Postives = 105/200 (52.50%), Query Frame = 3
Query:    6 IFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599
            +++ L +L++  FGN+ + T+  E +F+I  +  G L+  ++ GN+   +    +++     + R++  ++R  ++P+  +QR+  Y +  WA   G+D  E++ +LP+ LR DI  HL  + V Q+PLF+      L  +   ++    T GE +  +GD +Q + FV  G   S ++L        +LG G+  G EL
Sbjct:  459 LYFALSSLTSVGFGNVSANTD-TEKIFSICTMLIGALMHAVVFGNVTAIIQRMYARRFLYHSRTRDLRDYIRIHRIPKPLKQRMLEYFQATWAVNNGIDTTELLQSLPDELRADIAMHLHKE-VLQLPLFEAASRGCLRALSLALRPAFCTPGEYLIHQGDALQALYFVCSG---SMEVLKGG-TVLAILGKGDLIGCEL 652          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH3_MOUSE (Potassium voltage-gated channel subfamily H member 3 OS=Mus musculus GN=Kcnh3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.271e-17
Identity = 55/200 (27.50%), Postives = 105/200 (52.50%), Query Frame = 3
Query:    6 IFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599
            +++ L +L++  FGN+ + T+  E +F+I  +  G L+  ++ GN+   +    +++     + R++  ++R  ++P+  +QR+  Y +  WA   G+D  E++ +LP+ LR DI  HL  + V Q+PLF+      L  +   ++    T GE +  +GD +Q + FV  G   S ++L        +LG G+  G EL
Sbjct:  459 LYFALSSLTSVGFGNVSANTD-TEKIFSICTMLIGALMHAVVFGNVTAIIQRMYARRFLYHSRTRDLRDYIRIHRIPKPLKQRMLEYFQATWAVNNGIDTTELLQSLPDELRADIAMHLHKE-VLQLPLFEAASRGCLRALSLALRPAFCTPGEYLIHQGDALQALYFVCSG---SMEVLKGG-TVLAILGKGDLIGCEL 652          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH3_HUMAN (Potassium voltage-gated channel subfamily H member 3 OS=Homo sapiens GN=KCNH3 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.271e-17
Identity = 55/200 (27.50%), Postives = 105/200 (52.50%), Query Frame = 3
Query:    6 IFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599
            +++ L +L++  FGN+ + T+  E +F+I  +  G L+  ++ GN+   +    +++     + R++  ++R  ++P+  +QR+  Y +  WA   G+D  E++ +LP+ LR DI  HL  + V Q+PLF+      L  +   ++    T GE +  +GD +Q + FV  G   S ++L        +LG G+  G EL
Sbjct:  456 LYFALSSLTSVGFGNVSANTD-TEKIFSICTMLIGALMHAVVFGNVTAIIQRMYARRFLYHSRTRDLRDYIRIHRIPKPLKQRMLEYFQATWAVNNGIDTTELLQSLPDELRADIAMHLHKE-VLQLPLFEAASRGCLRALSLALRPAFCTPGEYLIHQGDALQALYFVCSG---SMEVLKGG-TVLAILGKGDLIGCEL 649          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA3_HUMAN (Cyclic nucleotide-gated cation channel alpha-3 OS=Homo sapiens GN=CNGA3 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16
Identity = 46/196 (23.47%), Postives = 104/196 (53.06%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            ++W  +TL+T G      +  E +F ++    G+L+   ++GN+   +    + +   Q K+ +I+ +M+ R++ +    RV  +    WA  + VDE E++ +LP+ L+ +I  ++ LD +++V +FQ  +  +L  +  +++  +F+ G+ I K+GD  + M  +  G L  + +  + +    +L  G++ G+
Sbjct:  356 LYWSTLTLTTIGETPPPVKDEEYLFVVVDFLVGVLIFATIVGNVGSMISNMNASRAEFQAKIDSIKQYMQFRKVTKDLETRVIRWFDYLWANKKTVDEKEVLKSLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGKEMYIINEGKL--AVVADDGVTQFVVLSDGSYFGE 549          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH4_HUMAN (Potassium voltage-gated channel subfamily H member 4 OS=Homo sapiens GN=KCNH4 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.065e-16
Identity = 52/193 (26.94%), Postives = 102/193 (52.85%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599
            +T   FGN+ + T+  E +F+I  +  G L+  ++ GN+   +    S++     +M++++ ++R  +LP+  +QR+  Y +  WA   G+D  E++ + P+ LR DI  HL  +++ Q+PLF       L  +   +K+     GE + + GD +Q   +V  G L   ++L +N+    +LG G+  G ++
Sbjct:  437 LTSVGFGNVCANTD-AEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYHSRMKDLKDFIRVHRLPRPLKQRMLEYFQTTWAVNSGIDANELLRDFPDELRADIAMHLNREIL-QLPLFGAASRGCLRALSLHIKTSFCAPGEYLLRRGDALQAHYYVCSGSL---EVLRDNM-VLAILGKGDLIGADI 623          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGB3_CANFA (Cyclic nucleotide-gated cation channel beta-3 OS=Canis familiaris GN=CNGB3 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16
Identity = 42/172 (24.42%), Postives = 91/172 (52.91%), Query Frame = 3
Query:    9 FWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQ 524
            +W + TL T G L       E+VF ++   SG+ + + LIG ++  + A T+ +   ++ M +   +M    +P+  + RVR +    W + R +DE +++  LP  ++  +   + L ++ +V LF+  D  ++ ++  R+KS ++  G+ + K+G+  + M  + +G +Q
Sbjct:  394 YWAVRTLITIGGLPEPQTSFEIVFQLLNFFSGVFVFSSLIGQMQDVIGAATANQNNFRISMDHTISYMNTYSIPKNVQNRVRTWYEYTWDSQRMLDESDLLCTLPVTMQLALTVDVNLSIISKVELFKGCDTQMIYDMLLRLKSTVYLPGDFVCKKGEIGKEMYIIKQGEVQ 565          
The following BLAST results are available for this feature:
BLAST of CF417831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CNGB3_MOUSE2.207e-1827.91Cyclic nucleotide-gated cation channel beta-3 OS=M... [more]
CNGA3_BOVIN3.764e-1825.51Cyclic nucleotide-gated cation channel alpha-3 OS=... [more]
CNGA3_MOUSE3.186e-1723.98Cyclic nucleotide-gated cation channel alpha-3 OS=... [more]
CNG1_CHICK3.186e-1725.00Cyclic nucleotide-gated channel cone photoreceptor... [more]
KCNH3_RAT9.271e-1727.50Potassium voltage-gated channel subfamily H member... [more]
KCNH3_MOUSE9.271e-1727.50Potassium voltage-gated channel subfamily H member... [more]
KCNH3_HUMAN9.271e-1727.50Potassium voltage-gated channel subfamily H member... [more]
CNGA3_HUMAN1.211e-1623.47Cyclic nucleotide-gated cation channel alpha-3 OS=... [more]
KCNH4_HUMAN2.065e-1626.94Potassium voltage-gated channel subfamily H member... [more]
CNGB3_CANFA2.697e-1624.42Cyclic nucleotide-gated cation channel beta-3 OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-761 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417831 ID=CF417831; Name=CF417831; organism=Citrus sinensis; type=EST; length=667bp
TTCCCATCTTTTGGGGCTTGATGACTCTCAGCACTTTTGGGAATCTGGAG
AGCACAACAGAATGGCTAGAAGTAGTTTTCAACATCATCGTTTTAACAAG
TGGGCTCCTTCTAGTCACCATGTTGATTGGAAATATAAAGGTGTTCTTGC
ATGCAACAACATCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATA
GAATGGTGGATGAGGAAAAGGCAATTGCCTCAAGGGTTCAGGCAGCGGGT
TCGCAACTACGAGCGGCAGCGATGGGCGGCAATGCGCGGTGTTGATGAGT
GTGAGATGATCAGTAACCTCCCTGAGGGCTTAAGAAGGGACATCAAGTAT
CATCTCTGCTTGGACTTAGTAAGACAGGTACCATTGTTCCAACATATGGA
TGATTTGGTTTTGGAGAATATTTGTGATCGAGTGAAGTCTCTCATATTTA
CAAAGGGTGAAGTGATAACAAAAGAGGGTGACCCAGTACAAAGAATGCTA
TTTGTAGTAAGAGGGCATCTTCAAAGCAGCCAAATTCTCCACAACAACAT
CAAAAGTTGCTGCATGTTGGGCCCTGGAAACTTCAGTGGCGATGAGCTTC
TATCCTGGTGCCTTCGGAGACCTTCATCGAAAGGCTACCGCCATCTTCAT
CTACTTTAATAACCCTG
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