CF417831

Overview
NameCF417831
Unique NameCF417831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH8_RAT (Potassium voltage-gated channel subfamily H member 8 OS=Rattus norvegicus GN=Kcnh8 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 51/193 (26.42%), Postives = 101/193 (52.33%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599
            +T   FGN+ + T+  E +F+I  +  G L+  ++ GN+   +    S+      + ++++ ++R   LPQ  +QR+  Y +  W+   G+D  E++ + P+ LR DI  HL  +++ Q+ LF+      L ++   +K+     GE + ++GD +Q + FV  G   S ++L +++    +LG G+  G  L
Sbjct:  432 LTSVGFGNVSANTD-AEKIFSICTMLIGALMHALVFGNVTAIIQRMYSRWSLYHTRTKDLKDFIRVHHLPQQLKQRMLEYFQTTWSVNNGIDSNELLKDFPDELRSDITMHLNKEIL-QLSLFECASRGCLRSLSLHIKTSFCAPGEYLLRQGDALQAIYFVCSG---SMEVLKDSM-VLAILGKGDLIGANL 618          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH8_MOUSE (Potassium voltage-gated channel subfamily H member 8 OS=Mus musculus GN=Kcnh8 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 51/193 (26.42%), Postives = 101/193 (52.33%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599
            +T   FGN+ + T+  E +F+I  +  G L+  ++ GN+   +    S+      + ++++ ++R   LPQ  +QR+  Y +  W+   G+D  E++ + P+ LR DI  HL  +++ Q+ LF+      L ++   +K+     GE + ++GD +Q + FV  G   S ++L +++    +LG G+  G  L
Sbjct:  432 LTSVGFGNVSANTD-AEKIFSICTMLIGALMHALVFGNVTAIIQRMYSRWSLYHTRTKDLKDFIRVHHLPQQLKQRMLEYFQTTWSVNNGIDSNELLKDFPDELRSDITMHLNKEIL-QLSLFECASRGCLRSLSLHIKTSFCAPGEYLLRQGDALQAIYFVCSG---SMEVLKDSM-VLAILGKGDLIGANL 618          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH8_HUMAN (Potassium voltage-gated channel subfamily H member 8 OS=Homo sapiens GN=KCNH8 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 51/193 (26.42%), Postives = 101/193 (52.33%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599
            +T   FGN+ + T+  E +F+I  +  G L+  ++ GN+   +    S+      + ++++ ++R   LPQ  +QR+  Y +  W+   G+D  E++ + P+ LR DI  HL  +++ Q+ LF+      L ++   +K+     GE + ++GD +Q + FV  G   S ++L +++    +LG G+  G  L
Sbjct:  432 LTSVGFGNVSANTD-AEKIFSICTMLIGALMHALVFGNVTAIIQRMYSRWSLYHTRTKDLKDFIRVHHLPQQLKQRMLEYFQTTWSVNNGIDSNELLKDFPDELRSDITMHLNKEIL-QLSLFECASRGCLRSLSLHIKTSFCAPGEYLLRQGDALQAIYFVCSG---SMEVLKDSM-VLAILGKGDLIGANL 618          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH4_RAT (Potassium voltage-gated channel subfamily H member 4 OS=Rattus norvegicus GN=Kcnh4 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 52/193 (26.94%), Postives = 101/193 (52.33%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599
            +T   FGN+ + T+  E +F+I  +  G L+  ++ GN+   +    S++     +M++++ ++R  +LP+  +QR+  Y +  WA   G+D  E++ + P+ LR DI  HL  +++ Q+PLF       L  +   +K+     GE + + GD +Q   +V  G L   ++L +N     +LG G+  G ++
Sbjct:  438 LTSVGFGNVCANTD-AEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYHSRMKDLKDFIRVHRLPRPLKQRMLEYFQTTWAVNSGIDANELLRDFPDELRADIAMHLNREIL-QLPLFGAASRGCLRALSLHIKTSFCAPGEFLLRRGDALQAHYYVCSGSL---EVLRDN-TVLAILGKGDLIGADI 624          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH5_MOUSE (Potassium voltage-gated channel subfamily H member 5 OS=Mus musculus GN=Kcnh5 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 51/198 (25.76%), Postives = 100/198 (50.51%), Query Frame = 3
Query:    6 IFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            +++ + +L+T  FGN+  TT+ +E +F++ ++  G LL   + GN+        +        + N+  +++  Q+P+G  +RV +Y    W+  +G+D  +++S  P+ +R DI  HL   +  + P FQ   D  L  +    +++    G++I   G+ V  + FVV G L+  Q    + +   +LG G+  GD
Sbjct:  423 LYFTMTSLTTIGFGNIAPTTD-VEKMFSVAMMMVGSLLYATIFGNVTTIFQQMYANTNRYHEMLNNVRDFLKLYQVPKGLSERVMDYIVSTWSMSKGIDTEKVLSICPKDMRADICVHLNRKVFNEHPAFQLASDGCLRALAVEFQTIHCAPGDLIYHAGESVDALCFVVSGSLEVIQ----DEEVVAILGKGDVFGD 615          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGB3_HUMAN (Cyclic nucleotide-gated cation channel beta-3 OS=Homo sapiens GN=CNGB3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 41/172 (23.84%), Postives = 90/172 (52.33%), Query Frame = 3
Query:    9 FWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQ 524
            +W + TL T G L       E+VF ++   SG+ + + LIG ++  + A T+ +   +  M +   +M    +P+  ++RVR +    W + R +DE +++  LP  ++  +   +   ++ +V LF+  D  ++ ++  R+KS+++  G+ + K+G+  + M  +  G +Q
Sbjct:  399 YWAVRTLITIGGLPEPQTLFEIVFQLLNFFSGVFVFSSLIGQMRDVIGAATANQNYFRACMDDTIAYMNNYSIPKLVQKRVRTWYEYTWDSQRMLDESDLLKTLPTTVQLALAIDVNFSIISKVDLFKGCDTQMIYDMLLRLKSVLYLPGDFVCKKGEIGKEMYIIKHGEVQ 570          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH5_RAT (Potassium voltage-gated channel subfamily H member 5 OS=Rattus norvegicus GN=Kcnh5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 50/198 (25.25%), Postives = 100/198 (50.51%), Query Frame = 3
Query:    6 IFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            +++ + +L+T  FGN+  TT+ +E +F++ ++  G LL   + GN+        +        + N+  +++  Q+P+G  +RV +Y    W+  +G+D  +++S  P+ +R DI  HL   +  + P F+   D  L  +    +++    G++I   G+ V  + FVV G L+  Q    + +   +LG G+  GD
Sbjct:  423 LYFTMTSLTTIGFGNIAPTTD-VEKMFSVAMMMVGSLLYATIFGNVTTIFQQMYANTNRYHEMLNNVRDFLKLYQVPKGLSERVMDYIVSTWSMSKGIDTEKVLSICPKDMRADICVHLNRKVFNEHPAFRLASDGCLRALAVEFQTIHCAPGDLIYHAGESVDALCFVVSGSLEVIQ----DEEVVAILGKGDVFGD 615          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH5_HUMAN (Potassium voltage-gated channel subfamily H member 5 OS=Homo sapiens GN=KCNH5 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 50/198 (25.25%), Postives = 100/198 (50.51%), Query Frame = 3
Query:    6 IFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            +++ + +L+T  FGN+  TT+ +E +F++ ++  G LL   + GN+        +        + N+  +++  Q+P+G  +RV +Y    W+  +G+D  +++S  P+ +R DI  HL   +  + P F+   D  L  +    +++    G++I   G+ V  + FVV G L+  Q    + +   +LG G+  GD
Sbjct:  423 LYFTMTSLTTIGFGNIAPTTD-VEKMFSVAMMMVGSLLYATIFGNVTTIFQQMYANTNRYHEMLNNVRDFLKLYQVPKGLSERVMDYIVSTWSMSKGIDTEKVLSICPKDMRADICVHLNRKVFNEHPAFRLASDGCLRALAVEFQTIHCAPGDLIYHAGESVDALCFVVSGSLEVIQ----DDEVVAILGKGDVFGD 615          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG_DROME (Cyclic nucleotide-gated cation channel OS=Drosophila melanogaster GN=Cng PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.644e-15
Identity = 48/195 (24.62%), Postives = 97/195 (49.74%), Query Frame = 3
Query:    9 FWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            +W  +TL+T G   +    +E +F +    +G+L+   ++GNI   +      +   Q +M  ++ +M  R++      RV  +    W+    +DE  +++ LP+ L+ +I   + +D ++QV +F   +  +LE +  ++K  +F+ G+ I ++GD  + M  V RG L  S +  + I     LG G+  G+
Sbjct:  304 YWSTLTLTTIGETPTPENDVEYLFVVADFLAGVLIFATIVGNIGSMISNMNVARVEFQNRMDGVKQYMAFRRVGHELEARVIRWFAYTWSQSGALDEERVLAALPDKLKAEIAIQVHMDTLKQVRIFHDTEPGLLEALVLKLKLQVFSPGDYICRKGDVGKEMYIVKRGKL--SVVGDDGITVLATLGAGSVFGE 496          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA1_CANFA (cGMP-gated cation channel alpha-1 OS=Canis familiaris GN=CNGA1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 46/196 (23.47%), Postives = 98/196 (50.00%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            ++W  +TL+T G         E VF ++    G+L+   ++GNI   +    + +   Q ++  I+ +M  R + +   +RV  +    W   + VDE E++  LP+ LR +I  ++ LD +++V +F   +  +L  +  +++  +++ G+ I K+GD  + M  +  G L  + +  + I    +L  G++ G+
Sbjct:  352 LYWSTLTLTTIGETPPPVRDSEYVFVVVDFLIGVLIFATIVGNIGSMISNMNAARAEFQARIDAIKQYMHFRNVSKDMEKRVIKWFDYLWTNKKTVDEKEVLKYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKL--AVVADDGITQFVVLSDGSYFGE 545          
The following BLAST results are available for this feature:
BLAST of CF417831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
KCNH8_RAT3.523e-1626.42Potassium voltage-gated channel subfamily H member... [more]
KCNH8_MOUSE3.523e-1626.42Potassium voltage-gated channel subfamily H member... [more]
KCNH8_HUMAN3.523e-1626.42Potassium voltage-gated channel subfamily H member... [more]
KCNH4_RAT3.523e-1626.94Potassium voltage-gated channel subfamily H member... [more]
KCNH5_MOUSE1.748e-1525.76Potassium voltage-gated channel subfamily H member... [more]
CNGB3_HUMAN2.982e-1523.84Cyclic nucleotide-gated cation channel beta-3 OS=H... [more]
KCNH5_RAT5.087e-1525.25Potassium voltage-gated channel subfamily H member... [more]
KCNH5_HUMAN5.087e-1525.25Potassium voltage-gated channel subfamily H member... [more]
CNG_DROME6.644e-1524.62Cyclic nucleotide-gated cation channel OS=Drosophi... [more]
CNGA1_CANFA8.677e-1523.47cGMP-gated cation channel alpha-1 OS=Canis familia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-761 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417831 ID=CF417831; Name=CF417831; organism=Citrus sinensis; type=EST; length=667bp
TTCCCATCTTTTGGGGCTTGATGACTCTCAGCACTTTTGGGAATCTGGAG
AGCACAACAGAATGGCTAGAAGTAGTTTTCAACATCATCGTTTTAACAAG
TGGGCTCCTTCTAGTCACCATGTTGATTGGAAATATAAAGGTGTTCTTGC
ATGCAACAACATCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATA
GAATGGTGGATGAGGAAAAGGCAATTGCCTCAAGGGTTCAGGCAGCGGGT
TCGCAACTACGAGCGGCAGCGATGGGCGGCAATGCGCGGTGTTGATGAGT
GTGAGATGATCAGTAACCTCCCTGAGGGCTTAAGAAGGGACATCAAGTAT
CATCTCTGCTTGGACTTAGTAAGACAGGTACCATTGTTCCAACATATGGA
TGATTTGGTTTTGGAGAATATTTGTGATCGAGTGAAGTCTCTCATATTTA
CAAAGGGTGAAGTGATAACAAAAGAGGGTGACCCAGTACAAAGAATGCTA
TTTGTAGTAAGAGGGCATCTTCAAAGCAGCCAAATTCTCCACAACAACAT
CAAAAGTTGCTGCATGTTGGGCCCTGGAAACTTCAGTGGCGATGAGCTTC
TATCCTGGTGCCTTCGGAGACCTTCATCGAAAGGCTACCGCCATCTTCAT
CTACTTTAATAACCCTG
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