CF417831
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH8_RAT (Potassium voltage-gated channel subfamily H member 8 OS=Rattus norvegicus GN=Kcnh8 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16 Identity = 51/193 (26.42%), Postives = 101/193 (52.33%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599 +T FGN+ + T+ E +F+I + G L+ ++ GN+ + S+ + ++++ ++R LPQ +QR+ Y + W+ G+D E++ + P+ LR DI HL +++ Q+ LF+ L ++ +K+ GE + ++GD +Q + FV G S ++L +++ +LG G+ G L Sbjct: 432 LTSVGFGNVSANTD-AEKIFSICTMLIGALMHALVFGNVTAIIQRMYSRWSLYHTRTKDLKDFIRVHHLPQQLKQRMLEYFQTTWSVNNGIDSNELLKDFPDELRSDITMHLNKEIL-QLSLFECASRGCLRSLSLHIKTSFCAPGEYLLRQGDALQAIYFVCSG---SMEVLKDSM-VLAILGKGDLIGANL 618
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH8_MOUSE (Potassium voltage-gated channel subfamily H member 8 OS=Mus musculus GN=Kcnh8 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16 Identity = 51/193 (26.42%), Postives = 101/193 (52.33%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599 +T FGN+ + T+ E +F+I + G L+ ++ GN+ + S+ + ++++ ++R LPQ +QR+ Y + W+ G+D E++ + P+ LR DI HL +++ Q+ LF+ L ++ +K+ GE + ++GD +Q + FV G S ++L +++ +LG G+ G L Sbjct: 432 LTSVGFGNVSANTD-AEKIFSICTMLIGALMHALVFGNVTAIIQRMYSRWSLYHTRTKDLKDFIRVHHLPQQLKQRMLEYFQTTWSVNNGIDSNELLKDFPDELRSDITMHLNKEIL-QLSLFECASRGCLRSLSLHIKTSFCAPGEYLLRQGDALQAIYFVCSG---SMEVLKDSM-VLAILGKGDLIGANL 618
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH8_HUMAN (Potassium voltage-gated channel subfamily H member 8 OS=Homo sapiens GN=KCNH8 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16 Identity = 51/193 (26.42%), Postives = 101/193 (52.33%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599 +T FGN+ + T+ E +F+I + G L+ ++ GN+ + S+ + ++++ ++R LPQ +QR+ Y + W+ G+D E++ + P+ LR DI HL +++ Q+ LF+ L ++ +K+ GE + ++GD +Q + FV G S ++L +++ +LG G+ G L Sbjct: 432 LTSVGFGNVSANTD-AEKIFSICTMLIGALMHALVFGNVTAIIQRMYSRWSLYHTRTKDLKDFIRVHHLPQQLKQRMLEYFQTTWSVNNGIDSNELLKDFPDELRSDITMHLNKEIL-QLSLFECASRGCLRSLSLHIKTSFCAPGEYLLRQGDALQAIYFVCSG---SMEVLKDSM-VLAILGKGDLIGANL 618
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH4_RAT (Potassium voltage-gated channel subfamily H member 4 OS=Rattus norvegicus GN=Kcnh4 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16 Identity = 52/193 (26.94%), Postives = 101/193 (52.33%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599 +T FGN+ + T+ E +F+I + G L+ ++ GN+ + S++ +M++++ ++R +LP+ +QR+ Y + WA G+D E++ + P+ LR DI HL +++ Q+PLF L + +K+ GE + + GD +Q +V G L ++L +N +LG G+ G ++ Sbjct: 438 LTSVGFGNVCANTD-AEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYHSRMKDLKDFIRVHRLPRPLKQRMLEYFQTTWAVNSGIDANELLRDFPDELRADIAMHLNREIL-QLPLFGAASRGCLRALSLHIKTSFCAPGEFLLRRGDALQAHYYVCSGSL---EVLRDN-TVLAILGKGDLIGADI 624
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH5_MOUSE (Potassium voltage-gated channel subfamily H member 5 OS=Mus musculus GN=Kcnh5 PE=2 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15 Identity = 51/198 (25.76%), Postives = 100/198 (50.51%), Query Frame = 3 Query: 6 IFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 +++ + +L+T FGN+ TT+ +E +F++ ++ G LL + GN+ + + N+ +++ Q+P+G +RV +Y W+ +G+D +++S P+ +R DI HL + + P FQ D L + +++ G++I G+ V + FVV G L+ Q + + +LG G+ GD Sbjct: 423 LYFTMTSLTTIGFGNIAPTTD-VEKMFSVAMMMVGSLLYATIFGNVTTIFQQMYANTNRYHEMLNNVRDFLKLYQVPKGLSERVMDYIVSTWSMSKGIDTEKVLSICPKDMRADICVHLNRKVFNEHPAFQLASDGCLRALAVEFQTIHCAPGDLIYHAGESVDALCFVVSGSLEVIQ----DEEVVAILGKGDVFGD 615
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGB3_HUMAN (Cyclic nucleotide-gated cation channel beta-3 OS=Homo sapiens GN=CNGB3 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15 Identity = 41/172 (23.84%), Postives = 90/172 (52.33%), Query Frame = 3 Query: 9 FWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQ 524 +W + TL T G L E+VF ++ SG+ + + LIG ++ + A T+ + + M + +M +P+ ++RVR + W + R +DE +++ LP ++ + + ++ +V LF+ D ++ ++ R+KS+++ G+ + K+G+ + M + G +Q Sbjct: 399 YWAVRTLITIGGLPEPQTLFEIVFQLLNFFSGVFVFSSLIGQMRDVIGAATANQNYFRACMDDTIAYMNNYSIPKLVQKRVRTWYEYTWDSQRMLDESDLLKTLPTTVQLALAIDVNFSIISKVDLFKGCDTQMIYDMLLRLKSVLYLPGDFVCKKGEIGKEMYIIKHGEVQ 570
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH5_RAT (Potassium voltage-gated channel subfamily H member 5 OS=Rattus norvegicus GN=Kcnh5 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15 Identity = 50/198 (25.25%), Postives = 100/198 (50.51%), Query Frame = 3 Query: 6 IFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 +++ + +L+T FGN+ TT+ +E +F++ ++ G LL + GN+ + + N+ +++ Q+P+G +RV +Y W+ +G+D +++S P+ +R DI HL + + P F+ D L + +++ G++I G+ V + FVV G L+ Q + + +LG G+ GD Sbjct: 423 LYFTMTSLTTIGFGNIAPTTD-VEKMFSVAMMMVGSLLYATIFGNVTTIFQQMYANTNRYHEMLNNVRDFLKLYQVPKGLSERVMDYIVSTWSMSKGIDTEKVLSICPKDMRADICVHLNRKVFNEHPAFRLASDGCLRALAVEFQTIHCAPGDLIYHAGESVDALCFVVSGSLEVIQ----DEEVVAILGKGDVFGD 615
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH5_HUMAN (Potassium voltage-gated channel subfamily H member 5 OS=Homo sapiens GN=KCNH5 PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15 Identity = 50/198 (25.25%), Postives = 100/198 (50.51%), Query Frame = 3 Query: 6 IFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 +++ + +L+T FGN+ TT+ +E +F++ ++ G LL + GN+ + + N+ +++ Q+P+G +RV +Y W+ +G+D +++S P+ +R DI HL + + P F+ D L + +++ G++I G+ V + FVV G L+ Q + + +LG G+ GD Sbjct: 423 LYFTMTSLTTIGFGNIAPTTD-VEKMFSVAMMMVGSLLYATIFGNVTTIFQQMYANTNRYHEMLNNVRDFLKLYQVPKGLSERVMDYIVSTWSMSKGIDTEKVLSICPKDMRADICVHLNRKVFNEHPAFRLASDGCLRALAVEFQTIHCAPGDLIYHAGESVDALCFVVSGSLEVIQ----DDEVVAILGKGDVFGD 615
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG_DROME (Cyclic nucleotide-gated cation channel OS=Drosophila melanogaster GN=Cng PE=2 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 6.644e-15 Identity = 48/195 (24.62%), Postives = 97/195 (49.74%), Query Frame = 3 Query: 9 FWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 +W +TL+T G + +E +F + +G+L+ ++GNI + + Q +M ++ +M R++ RV + W+ +DE +++ LP+ L+ +I + +D ++QV +F + +LE + ++K +F+ G+ I ++GD + M V RG L S + + I LG G+ G+ Sbjct: 304 YWSTLTLTTIGETPTPENDVEYLFVVADFLAGVLIFATIVGNIGSMISNMNVARVEFQNRMDGVKQYMAFRRVGHELEARVIRWFAYTWSQSGALDEERVLAALPDKLKAEIAIQVHMDTLKQVRIFHDTEPGLLEALVLKLKLQVFSPGDYICRKGDVGKEMYIVKRGKL--SVVGDDGITVLATLGAGSVFGE 496
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA1_CANFA (cGMP-gated cation channel alpha-1 OS=Canis familiaris GN=CNGA1 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15 Identity = 46/196 (23.47%), Postives = 98/196 (50.00%), Query Frame = 3 Query: 6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 ++W +TL+T G E VF ++ G+L+ ++GNI + + + Q ++ I+ +M R + + +RV + W + VDE E++ LP+ LR +I ++ LD +++V +F + +L + +++ +++ G+ I K+GD + M + G L + + + I +L G++ G+ Sbjct: 352 LYWSTLTLTTIGETPPPVRDSEYVFVVVDFLIGVLIFATIVGNIGSMISNMNAARAEFQARIDAIKQYMHFRNVSKDMEKRVIKWFDYLWTNKKTVDEKEVLKYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKL--AVVADDGITQFVVLSDGSYFGE 545 The following BLAST results are available for this feature:
BLAST of CF417831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417831 ID=CF417831; Name=CF417831; organism=Citrus sinensis; type=EST; length=667bpback to top |