CF417831

Overview
NameCF417831
Unique NameCF417831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG_ICTPU (Cyclic nucleotide-gated cation channel OS=Ictalurus punctatus PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 45/195 (23.08%), Postives = 98/195 (50.26%), Query Frame = 3
Query:    9 FWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            +W  +TL+T G +    +  E VF +     G+L+   ++GN+   +    + +   Q ++  I+ +M  R++ +    RV  +    W   + VDE E++ NLP+ LR +I  ++ LD +++V +FQ  +  +L  +  +++  +++ G+ I ++GD  + M  +  G L  + +  + +    +L  G   G+
Sbjct:  322 YWSTLTLTTIGEMPPPVKDEEYVFVVFDFLVGVLIFATIVGNVGSMIANMNATRAEFQTRIDAIKHYMHFRKVNRTLETRVIKWFDYLWTNKKTVDEQEVLKNLPDKLRAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPQVYSPGDYICRKGDIGKEMYIIKEGQL--AVVADDGVTQFALLTAGGCFGE 514          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA1_HUMAN (cGMP-gated cation channel alpha-1 OS=Homo sapiens GN=CNGA1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 45/196 (22.96%), Postives = 98/196 (50.00%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            ++W  +TL+T G         E VF ++    G+L+   ++GNI   +    + +   Q ++  I+ +M  R + +   +RV  +    W   + VDE E++  LP+ LR +I  ++ LD +++V +F   +  +L  +  +++  +++ G+ I K+GD  + M  +  G L  + +  + +    +L  G++ G+
Sbjct:  353 LYWSTLTLTTIGETPPPVRDSEYVFVVVDFLIGVLIFATIVGNIGSMISNMNAARAEFQARIDAIKQYMHFRNVSKDMEKRVIKWFDYLWTNKKTVDEKEVLKYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKL--AVVADDGVTQFVVLSDGSYFGE 546          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA2_HUMAN (Cyclic nucleotide-gated olfactory channel OS=Homo sapiens GN=CNGA2 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.933e-14
Identity = 44/196 (22.45%), Postives = 98/196 (50.00%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            ++W  +TL+T G      +  E +F I     G+L+   ++GN+   +    + +   Q K+  ++ +M+ R++ +G   +V  +    W   + VDE E++ NLP  LR +I  ++ L  +++V +F   +  +L  +  +++  +F+ G+ I ++GD  + M  +  G L  + +  + +    +L  G+  G+
Sbjct:  328 LYWSTLTLTTIGETPPPVKDEEYLFVIFDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKGMEAKVIRWFDYLWTNKKTVDEREILKNLPAKLRAEIAINVHLSTLKKVRIFHDCEAGLLVELVLKLRPQVFSPGDYICRKGDIGKEMYIIKEGKL--AVVADDGVTQYALLSAGSCFGE 521          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA2_BOVIN (Cyclic nucleotide-gated olfactory channel OS=Bos taurus GN=CNGA2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.525e-14
Identity = 44/196 (22.45%), Postives = 98/196 (50.00%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            ++W  +TL+T G      +  E +F I     G+L+   ++GN+   +    + +   Q K+  ++ +M+ R++ +    +V  +    W   + VDE E++ NLP  LR +I  ++ L  +++V +FQ  +  +L  +  +++  +F+ G+ I ++GD  + M  +  G L  + +  + +    +L  G+  G+
Sbjct:  328 LYWSTLTLTTIGETPPPVKDEEYLFVIFDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKEMEAKVIRWFDYLWTNKKSVDEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQDCEAGLLVELVLKLRPQVFSPGDYICRKGDIGKEMYIIKEGKL--AVVADDGVTQYALLSAGSCFGE 521          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA2_RAT (Cyclic nucleotide-gated olfactory channel OS=Rattus norvegicus GN=Cnga2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14
Identity = 44/196 (22.45%), Postives = 98/196 (50.00%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            ++W  +TL+T G      +  E +F I     G+L+   ++GN+   +    + +   Q K+  ++ +M+ R++ +    +V  +    W   + VDE E++ NLP  LR +I  ++ L  +++V +FQ  +  +L  +  +++  +F+ G+ I ++GD  + M  +  G L  + +  + +    +L  G+  G+
Sbjct:  330 LYWSTLTLTTIGETPPPVKDEEYLFVIFDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKDMEAKVIKWFDYLWTNKKTVDEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQDCEAGLLVELVLKLRPQVFSPGDYICRKGDIGKEMYIIKEGKL--AVVADDGVTQYALLSAGSCFGE 523          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA2_MOUSE (Cyclic nucleotide-gated olfactory channel OS=Mus musculus GN=Cnga2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14
Identity = 44/196 (22.45%), Postives = 98/196 (50.00%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            ++W  +TL+T G      +  E +F I     G+L+   ++GN+   +    + +   Q K+  ++ +M+ R++ +    +V  +    W   + VDE E++ NLP  LR +I  ++ L  +++V +FQ  +  +L  +  +++  +F+ G+ I ++GD  + M  +  G L  + +  + +    +L  G+  G+
Sbjct:  330 LYWSTLTLTTIGETPPPVKDEEYLFFIFDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKDMEAKVIKWFDYLWTNKKTVDEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQDCEAGLLVELVLKLRPQVFSPGDYICRKGDIGKEMYIIKEGKL--AVVADDGVTQYALLSAGSCFGE 523          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA1_RAT (cGMP-gated cation channel alpha-1 OS=Rattus norvegicus GN=Cnga1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14
Identity = 46/196 (23.47%), Postives = 98/196 (50.00%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            ++W  +TL+T G         E VF ++    G+L+   ++GNI   +    + +   Q ++  I+ +M  R + +   +RV  +    W   + VDE E++  LP+ LR +I  ++ LD +++V +F   +  +L  +  +++  +++ G+ I K+GD  + M  +  G L  + +  + I    +L  G++ G+
Sbjct:  344 LYWSTLTLTTIGETPPPVLDSEYVFVVVDFLIGVLIFATIVGNIGSMISNMNAARAEFQSRVDAIKQYMNFRNVSKDMEKRVIKWFDYLWTNKKTVDEREVLRYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKL--AVVADDGITQFVVLSDGSYFGE 537          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA2_RABIT (Cyclic nucleotide-gated olfactory channel OS=Oryctolagus cuniculus GN=CNGA2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.307e-14
Identity = 44/196 (22.45%), Postives = 98/196 (50.00%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            ++W  +TL+T G      +  E +F I     G+L+   ++GN+   +    + +   Q K+  ++ +M+ R++ +    +V  +    W   + VDE E++ NLP  LR +I  ++ L  +++V +FQ  +  +L  +  +++  +F+ G+ I ++GD  + M  +  G L  + +  + +    +L  G+  G+
Sbjct:  328 LYWSTLTLTTIGETPPPVKDEEYLFVIFDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKEMEAKVIKWFDYLWTNKKTVDEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQDCEAGLLVELVLKLRPQVFSPGDYICRKGDIGKEMYIIKEGKL--AVVADDGVTQYALLSAGSCFGE 521          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA1_MOUSE (cGMP-gated cation channel alpha-1 OS=Mus musculus GN=Cnga1 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.307e-14
Identity = 45/196 (22.96%), Postives = 98/196 (50.00%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            ++W  +TL+T G         E +F ++    G+L+   ++GNI   +    + +   Q ++  I+ +M  R + +   +RV  +    W   + VDE E++  LP+ LR +I  ++ LD +++V +F   +  +L  +  +++  +++ G+ I K+GD  + M  +  G L  + +  + I    +L  G++ G+
Sbjct:  345 LYWSTLTLTTIGETPPPVLDSEYIFVVVDFLIGVLIFATIVGNIGSMISNMNAARAEFQSRVDAIKQYMNFRNVSKDMEKRVIKWFDYLWTNKKTVDEREVLRYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKL--AVVADDGITQFVVLSDGSYFGE 538          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH1_RAT (Potassium voltage-gated channel subfamily H member 1 OS=Rattus norvegicus GN=Kcnh1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14
Identity = 47/191 (24.61%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            +T   FGN+  +T+ +E +F + ++  G LL   + GN+        +        + ++  +++  Q+P+G  +RV +Y    W+  RG+D  +++   P+ +R DI  HL   + ++ P F+   D  L  +    +++    G++I   G+ V  + FVV G L+  Q    + +   +LG G+  GD
Sbjct:  434 LTSVGFGNIAPSTD-IEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNRYHEMLNSVRDFLKLYQVPKGLSERVMDYIVSTWSMSRGIDTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ----DDEVVAILGKGDVFGD 619          
The following BLAST results are available for this feature:
BLAST of CF417831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CNG_ICTPU1.133e-1423.08Cyclic nucleotide-gated cation channel OS=Ictaluru... [more]
CNGA1_HUMAN1.133e-1422.96cGMP-gated cation channel alpha-1 OS=Homo sapiens ... [more]
CNGA2_HUMAN1.933e-1422.45Cyclic nucleotide-gated olfactory channel OS=Homo ... [more]
CNGA2_BOVIN2.525e-1422.45Cyclic nucleotide-gated olfactory channel OS=Bos t... [more]
CNGA2_RAT3.297e-1422.45Cyclic nucleotide-gated olfactory channel OS=Rattu... [more]
CNGA2_MOUSE3.297e-1422.45Cyclic nucleotide-gated olfactory channel OS=Mus m... [more]
CNGA1_RAT3.297e-1423.47cGMP-gated cation channel alpha-1 OS=Rattus norveg... [more]
CNGA2_RABIT4.307e-1422.45Cyclic nucleotide-gated olfactory channel OS=Oryct... [more]
CNGA1_MOUSE4.307e-1422.96cGMP-gated cation channel alpha-1 OS=Mus musculus ... [more]
KCNH1_RAT5.625e-1424.61Potassium voltage-gated channel subfamily H member... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-761 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417831 ID=CF417831; Name=CF417831; organism=Citrus sinensis; type=EST; length=667bp
TTCCCATCTTTTGGGGCTTGATGACTCTCAGCACTTTTGGGAATCTGGAG
AGCACAACAGAATGGCTAGAAGTAGTTTTCAACATCATCGTTTTAACAAG
TGGGCTCCTTCTAGTCACCATGTTGATTGGAAATATAAAGGTGTTCTTGC
ATGCAACAACATCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATA
GAATGGTGGATGAGGAAAAGGCAATTGCCTCAAGGGTTCAGGCAGCGGGT
TCGCAACTACGAGCGGCAGCGATGGGCGGCAATGCGCGGTGTTGATGAGT
GTGAGATGATCAGTAACCTCCCTGAGGGCTTAAGAAGGGACATCAAGTAT
CATCTCTGCTTGGACTTAGTAAGACAGGTACCATTGTTCCAACATATGGA
TGATTTGGTTTTGGAGAATATTTGTGATCGAGTGAAGTCTCTCATATTTA
CAAAGGGTGAAGTGATAACAAAAGAGGGTGACCCAGTACAAAGAATGCTA
TTTGTAGTAAGAGGGCATCTTCAAAGCAGCCAAATTCTCCACAACAACAT
CAAAAGTTGCTGCATGTTGGGCCCTGGAAACTTCAGTGGCGATGAGCTTC
TATCCTGGTGCCTTCGGAGACCTTCATCGAAAGGCTACCGCCATCTTCAT
CTACTTTAATAACCCTG
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