CF417831

Overview
NameCF417831
Unique NameCF417831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH1_MOUSE (Potassium voltage-gated channel subfamily H member 1 OS=Mus musculus GN=Kcnh1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14
Identity = 47/191 (24.61%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            +T   FGN+  +T+ +E +F + ++  G LL   + GN+        +        + ++  +++  Q+P+G  +RV +Y    W+  RG+D  +++   P+ +R DI  HL   + ++ P F+   D  L  +    +++    G++I   G+ V  + FVV G L+  Q    + +   +LG G+  GD
Sbjct:  461 LTSVGFGNIAPSTD-IEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNRYHEMLNSVRDFLKLYQVPKGLSERVMDYIVSTWSMSRGIDTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ----DDEVVAILGKGDVFGD 646          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH1_HUMAN (Potassium voltage-gated channel subfamily H member 1 OS=Homo sapiens GN=KCNH1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14
Identity = 47/191 (24.61%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            +T   FGN+  +T+ +E +F + ++  G LL   + GN+        +        + ++  +++  Q+P+G  +RV +Y    W+  RG+D  +++   P+ +R DI  HL   + ++ P F+   D  L  +    +++    G++I   G+ V  + FVV G L+  Q    + +   +LG G+  GD
Sbjct:  461 LTSVGFGNIAPSTD-IEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNRYHEMLNSVRDFLKLYQVPKGLSERVMDYIVSTWSMSRGIDTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ----DDEVVAILGKGDVFGD 646          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH1_BOVIN (Potassium voltage-gated channel subfamily H member 1 OS=Bos taurus GN=KCNH1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14
Identity = 47/191 (24.61%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            +T   FGN+  +T+ +E +F + ++  G LL   + GN+        +        + ++  +++  Q+P+G  +RV +Y    W+  RG+D  +++   P+ +R DI  HL   + ++ P F+   D  L  +    +++    G++I   G+ V  + FVV G L+  Q    + +   +LG G+  GD
Sbjct:  461 LTSVGFGNIAPSTD-IEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNRYHEMLNSVRDFLKLYQVPKGLSERVMDYIVSTWSMSRGIDTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ----DDEVVAILGKGDVFGD 646          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG_CAEEL (Cyclic nucleotide-gated cation channel OS=Caenorhabditis elegans GN=tax-4 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 42/172 (24.42%), Postives = 88/172 (51.16%), Query Frame = 3
Query:    9 FWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQ 524
            +W  + L+T G + S    +E  F  + L  G+L+   ++GN+   +   ++ +   Q KM  I+ +M  R++ +    RV  +    W   + + + +++  LP+ L+ +I   +  + +R+V +FQ  +  +L  +  +++  +F+ G+ I K+GD  + M  V RG LQ
Sbjct:  368 YWSTLILTTIGEVPSPVRNIEYAFVTLDLMCGVLIFATIVGNVGSMISNMSAARTEFQNKMDGIKQYMELRKVSKQLEIRVIKWFDYLWTNKQSLSDQQVLKVLPDKLQAEIAMQVHFETLRKVRIFQDCEAGLLAELVLKLQLQVFSPGDFICKKGDIGREMYIVKRGRLQ 539          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA1_BOVIN (cGMP-gated cation channel alpha-1 OS=Bos taurus GN=CNGA1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 45/196 (22.96%), Postives = 96/196 (48.98%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            ++W  +TL+T G         E  F +     G+L+   ++GNI   +    + +   Q ++  I+ +M  R + +   +RV  +    W   + VDE E++  LP+ LR +I  ++ LD +++V +F   +  +L  +  +++  +++ G+ I K+GD  + M  +  G L  + +  + I    +L  G++ G+
Sbjct:  351 LYWSTLTLTTIGETPPPVRDSEYFFVVADFLIGVLIFATIVGNIGSMISNMNAARAEFQARIDAIKQYMHFRNVSKDMEKRVIKWFDYLWTNKKTVDEREVLKYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKL--AVVADDGITQFVVLSDGSYFGE 544          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG3_CHICK (Cyclic nucleotide-gated channel rod photoreceptor subunit alpha OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 42/196 (21.43%), Postives = 97/196 (49.49%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            ++W  +TL+T G         E  F ++    G+L+   ++GN+   +    + +   Q K+  I+ +M  R + +   +RV  +    W   + VDE E++  LP+ LR +I  ++ L+ +++V +F   +  +L  +  +++  +++ G+ I ++GD  + M  +  G L  + +  + +    +L  G++ G+
Sbjct:  305 LYWSTLTLTTIGETPPPVRDSEYFFVVVDFLVGVLIFATIVGNVGSMISNMNAARAEFQAKIDAIKQYMHFRNVSKDMEKRVIKWFDYLWTNKKAVDEREVLKYLPDKLRAEIAINVHLETLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICRKGDIGREMYIIKEGKL--AVVADDGVTQFVVLSDGSYFGE 498          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGB1_BOVIN (Cyclic nucleotide-gated cation channel beta-1 OS=Bos taurus GN=CNGB1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 40/172 (23.26%), Postives = 89/172 (51.74%), Query Frame = 3
Query:    9 FWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQ 524
            +W + TL T G L       E+VF  +   +G+   +++IG ++  + A T+ +   +  M +   +M   ++P+  + RV+ +    W +   +DE E++  LP+ +R D+   +   +V +V LFQ  D  ++ ++  R++S+++   + + K+G+  + M  +  G +Q
Sbjct:  951 YWAVKTLITIGGLPDPRTLFEIVFQGLNYFTGVFAFSVMIGQMRDVVGAATAGQTYYRSCMDSTVKYMNFYKIPRSVQNRVKTWYEYTWHSQGMLDESELMVQLPDKMRLDLAIDVNYSIVSKVALFQGCDRQMIFDMLKRLRSVVYLPNDYVCKKGEIGREMYIIQAGQVQ 1122          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH6_RAT (Potassium voltage-gated channel subfamily H member 6 OS=Rattus norvegicus GN=Kcnh6 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.137e-13
Identity = 50/191 (26.18%), Postives = 89/191 (46.60%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            +T   FGN+   T   E VF+I V+  G L+   + GN+   +    S       +M  ++ ++R  Q+P   RQR+  Y +  W+   G+D   ++   PE L+ DI  HL   L++  P F+      L  +  + K+     G+ +   GD +  + F+ RG   S +IL +++    +LG  +  G+
Sbjct:  474 LTSVGFGNVSPNTN-SEKVFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLHRALLQHCPAFRGASKGCLRALAVKFKTTHAPPGDTLVHLGDVLSTLYFISRG---SIEILRDDV-VVAILGKNDIFGE 659          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGB1_HUMAN (Cyclic nucleotide-gated cation channel beta-1 OS=Homo sapiens GN=CNGB1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 39/172 (22.67%), Postives = 91/172 (52.91%), Query Frame = 3
Query:    9 FWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQ 524
            ++ + TL T G L       E+VF ++   +G+   +++IG ++  + A T+ +   +  M +   +M   ++P+  + RV+ +    W +   +DE E++  LP+ +R D+   +  ++V +V LFQ  D  ++ ++  R++S+++   + + K+G+  + M  +  G +Q
Sbjct:  837 YFAVKTLITIGGLPDPKTLFEIVFQLLNYFTGVFAFSVMIGQMRDVVGAATAGQTYYRSCMDSTVKYMNFYKIPKSVQNRVKTWYEYTWHSQGMLDESELMVQLPDKMRLDLAIDVNYNIVSKVALFQGCDRQMIFDMLKRLRSVVYLPNDYVCKKGEIGREMYIIQAGQVQ 1008          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH6_HUMAN (Potassium voltage-gated channel subfamily H member 6 OS=Homo sapiens GN=KCNH6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.646e-13
Identity = 50/191 (26.18%), Postives = 88/191 (46.07%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            +T   FGN+   T   E VF+I V+  G L+   + GN+   +    S       +M  ++ ++R  Q+P   RQR+  Y +  W+   G+D   ++   PE L+ DI  HL   L++  P F       L  +  + K+     G+ +   GD +  + F+ RG   S +IL +++    +LG  +  G+
Sbjct:  474 LTSVGFGNVSPNTN-SEKVFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLHRALLQHCPAFSGAGKGCLRALAVKFKTTHAPPGDTLVHLGDVLSTLYFISRG---SIEILRDDV-VVAILGKNDIFGE 659          
The following BLAST results are available for this feature:
BLAST of CF417831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
KCNH1_MOUSE5.625e-1424.61Potassium voltage-gated channel subfamily H member... [more]
KCNH1_HUMAN5.625e-1424.61Potassium voltage-gated channel subfamily H member... [more]
KCNH1_BOVIN5.625e-1424.61Potassium voltage-gated channel subfamily H member... [more]
CNG_CAEEL9.594e-1424.42Cyclic nucleotide-gated cation channel OS=Caenorha... [more]
CNGA1_BOVIN9.594e-1422.96cGMP-gated cation channel alpha-1 OS=Bos taurus GN... [more]
CNG3_CHICK9.594e-1421.43Cyclic nucleotide-gated channel rod photoreceptor ... [more]
CNGB1_BOVIN1.253e-1323.26Cyclic nucleotide-gated cation channel beta-1 OS=B... [more]
KCNH6_RAT2.137e-1326.18Potassium voltage-gated channel subfamily H member... [more]
CNGB1_HUMAN2.791e-1322.67Cyclic nucleotide-gated cation channel beta-1 OS=H... [more]
KCNH6_HUMAN3.646e-1326.18Potassium voltage-gated channel subfamily H member... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-761 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417831 ID=CF417831; Name=CF417831; organism=Citrus sinensis; type=EST; length=667bp
TTCCCATCTTTTGGGGCTTGATGACTCTCAGCACTTTTGGGAATCTGGAG
AGCACAACAGAATGGCTAGAAGTAGTTTTCAACATCATCGTTTTAACAAG
TGGGCTCCTTCTAGTCACCATGTTGATTGGAAATATAAAGGTGTTCTTGC
ATGCAACAACATCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATA
GAATGGTGGATGAGGAAAAGGCAATTGCCTCAAGGGTTCAGGCAGCGGGT
TCGCAACTACGAGCGGCAGCGATGGGCGGCAATGCGCGGTGTTGATGAGT
GTGAGATGATCAGTAACCTCCCTGAGGGCTTAAGAAGGGACATCAAGTAT
CATCTCTGCTTGGACTTAGTAAGACAGGTACCATTGTTCCAACATATGGA
TGATTTGGTTTTGGAGAATATTTGTGATCGAGTGAAGTCTCTCATATTTA
CAAAGGGTGAAGTGATAACAAAAGAGGGTGACCCAGTACAAAGAATGCTA
TTTGTAGTAAGAGGGCATCTTCAAAGCAGCCAAATTCTCCACAACAACAT
CAAAAGTTGCTGCATGTTGGGCCCTGGAAACTTCAGTGGCGATGAGCTTC
TATCCTGGTGCCTTCGGAGACCTTCATCGAAAGGCTACCGCCATCTTCAT
CTACTTTAATAACCCTG
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