CF417831
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH1_MOUSE (Potassium voltage-gated channel subfamily H member 1 OS=Mus musculus GN=Kcnh1 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14 Identity = 47/191 (24.61%), Postives = 93/191 (48.69%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 +T FGN+ +T+ +E +F + ++ G LL + GN+ + + ++ +++ Q+P+G +RV +Y W+ RG+D +++ P+ +R DI HL + ++ P F+ D L + +++ G++I G+ V + FVV G L+ Q + + +LG G+ GD Sbjct: 461 LTSVGFGNIAPSTD-IEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNRYHEMLNSVRDFLKLYQVPKGLSERVMDYIVSTWSMSRGIDTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ----DDEVVAILGKGDVFGD 646
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH1_HUMAN (Potassium voltage-gated channel subfamily H member 1 OS=Homo sapiens GN=KCNH1 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14 Identity = 47/191 (24.61%), Postives = 93/191 (48.69%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 +T FGN+ +T+ +E +F + ++ G LL + GN+ + + ++ +++ Q+P+G +RV +Y W+ RG+D +++ P+ +R DI HL + ++ P F+ D L + +++ G++I G+ V + FVV G L+ Q + + +LG G+ GD Sbjct: 461 LTSVGFGNIAPSTD-IEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNRYHEMLNSVRDFLKLYQVPKGLSERVMDYIVSTWSMSRGIDTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ----DDEVVAILGKGDVFGD 646
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH1_BOVIN (Potassium voltage-gated channel subfamily H member 1 OS=Bos taurus GN=KCNH1 PE=2 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14 Identity = 47/191 (24.61%), Postives = 93/191 (48.69%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 +T FGN+ +T+ +E +F + ++ G LL + GN+ + + ++ +++ Q+P+G +RV +Y W+ RG+D +++ P+ +R DI HL + ++ P F+ D L + +++ G++I G+ V + FVV G L+ Q + + +LG G+ GD Sbjct: 461 LTSVGFGNIAPSTD-IEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNRYHEMLNSVRDFLKLYQVPKGLSERVMDYIVSTWSMSRGIDTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ----DDEVVAILGKGDVFGD 646
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG_CAEEL (Cyclic nucleotide-gated cation channel OS=Caenorhabditis elegans GN=tax-4 PE=2 SV=3) HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14 Identity = 42/172 (24.42%), Postives = 88/172 (51.16%), Query Frame = 3 Query: 9 FWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQ 524 +W + L+T G + S +E F + L G+L+ ++GN+ + ++ + Q KM I+ +M R++ + RV + W + + + +++ LP+ L+ +I + + +R+V +FQ + +L + +++ +F+ G+ I K+GD + M V RG LQ Sbjct: 368 YWSTLILTTIGEVPSPVRNIEYAFVTLDLMCGVLIFATIVGNVGSMISNMSAARTEFQNKMDGIKQYMELRKVSKQLEIRVIKWFDYLWTNKQSLSDQQVLKVLPDKLQAEIAMQVHFETLRKVRIFQDCEAGLLAELVLKLQLQVFSPGDFICKKGDIGREMYIVKRGRLQ 539
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGA1_BOVIN (cGMP-gated cation channel alpha-1 OS=Bos taurus GN=CNGA1 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14 Identity = 45/196 (22.96%), Postives = 96/196 (48.98%), Query Frame = 3 Query: 6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 ++W +TL+T G E F + G+L+ ++GNI + + + Q ++ I+ +M R + + +RV + W + VDE E++ LP+ LR +I ++ LD +++V +F + +L + +++ +++ G+ I K+GD + M + G L + + + I +L G++ G+ Sbjct: 351 LYWSTLTLTTIGETPPPVRDSEYFFVVADFLIGVLIFATIVGNIGSMISNMNAARAEFQARIDAIKQYMHFRNVSKDMEKRVIKWFDYLWTNKKTVDEREVLKYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKL--AVVADDGITQFVVLSDGSYFGE 544
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG3_CHICK (Cyclic nucleotide-gated channel rod photoreceptor subunit alpha OS=Gallus gallus PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14 Identity = 42/196 (21.43%), Postives = 97/196 (49.49%), Query Frame = 3 Query: 6 IFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 ++W +TL+T G E F ++ G+L+ ++GN+ + + + Q K+ I+ +M R + + +RV + W + VDE E++ LP+ LR +I ++ L+ +++V +F + +L + +++ +++ G+ I ++GD + M + G L + + + + +L G++ G+ Sbjct: 305 LYWSTLTLTTIGETPPPVRDSEYFFVVVDFLVGVLIFATIVGNVGSMISNMNAARAEFQAKIDAIKQYMHFRNVSKDMEKRVIKWFDYLWTNKKAVDEREVLKYLPDKLRAEIAINVHLETLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICRKGDIGREMYIIKEGKL--AVVADDGVTQFVVLSDGSYFGE 498
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGB1_BOVIN (Cyclic nucleotide-gated cation channel beta-1 OS=Bos taurus GN=CNGB1 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13 Identity = 40/172 (23.26%), Postives = 89/172 (51.74%), Query Frame = 3 Query: 9 FWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQ 524 +W + TL T G L E+VF + +G+ +++IG ++ + A T+ + + M + +M ++P+ + RV+ + W + +DE E++ LP+ +R D+ + +V +V LFQ D ++ ++ R++S+++ + + K+G+ + M + G +Q Sbjct: 951 YWAVKTLITIGGLPDPRTLFEIVFQGLNYFTGVFAFSVMIGQMRDVVGAATAGQTYYRSCMDSTVKYMNFYKIPRSVQNRVKTWYEYTWHSQGMLDESELMVQLPDKMRLDLAIDVNYSIVSKVALFQGCDRQMIFDMLKRLRSVVYLPNDYVCKKGEIGREMYIIQAGQVQ 1122
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH6_RAT (Potassium voltage-gated channel subfamily H member 6 OS=Rattus norvegicus GN=Kcnh6 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.137e-13 Identity = 50/191 (26.18%), Postives = 89/191 (46.60%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 +T FGN+ T E VF+I V+ G L+ + GN+ + S +M ++ ++R Q+P RQR+ Y + W+ G+D ++ PE L+ DI HL L++ P F+ L + + K+ G+ + GD + + F+ RG S +IL +++ +LG + G+ Sbjct: 474 LTSVGFGNVSPNTN-SEKVFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLHRALLQHCPAFRGASKGCLRALAVKFKTTHAPPGDTLVHLGDVLSTLYFISRG---SIEILRDDV-VVAILGKNDIFGE 659
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGB1_HUMAN (Cyclic nucleotide-gated cation channel beta-1 OS=Homo sapiens GN=CNGB1 PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13 Identity = 39/172 (22.67%), Postives = 91/172 (52.91%), Query Frame = 3 Query: 9 FWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQ 524 ++ + TL T G L E+VF ++ +G+ +++IG ++ + A T+ + + M + +M ++P+ + RV+ + W + +DE E++ LP+ +R D+ + ++V +V LFQ D ++ ++ R++S+++ + + K+G+ + M + G +Q Sbjct: 837 YFAVKTLITIGGLPDPKTLFEIVFQLLNYFTGVFAFSVMIGQMRDVVGAATAGQTYYRSCMDSTVKYMNFYKIPKSVQNRVKTWYEYTWHSQGMLDESELMVQLPDKMRLDLAIDVNYNIVSKVALFQGCDRQMIFDMLKRLRSVVYLPNDYVCKKGEIGREMYIIQAGQVQ 1008
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH6_HUMAN (Potassium voltage-gated channel subfamily H member 6 OS=Homo sapiens GN=KCNH6 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.646e-13 Identity = 50/191 (26.18%), Postives = 88/191 (46.07%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 +T FGN+ T E VF+I V+ G L+ + GN+ + S +M ++ ++R Q+P RQR+ Y + W+ G+D ++ PE L+ DI HL L++ P F L + + K+ G+ + GD + + F+ RG S +IL +++ +LG + G+ Sbjct: 474 LTSVGFGNVSPNTN-SEKVFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLHRALLQHCPAFSGAGKGCLRALAVKFKTTHAPPGDTLVHLGDVLSTLYFISRG---SIEILRDDV-VVAILGKNDIFGE 659 The following BLAST results are available for this feature:
BLAST of CF417831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417831 ID=CF417831; Name=CF417831; organism=Citrus sinensis; type=EST; length=667bpback to top |