CF417831
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNAE_DROME (Potassium voltage-gated channel protein eag OS=Drosophila melanogaster GN=eag PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12 Identity = 46/192 (23.96%), Postives = 90/192 (46.88%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDE 596 MT FGN+ + T+ E VF I ++ LL + G++ + TS + N+ +M+ ++P+ +RV +Y WA +G+D ++++ P+ ++ DI HL + + P F+ D L + G+++ G+ + + F+V G L+ Q + + +LG G+ GD+ Sbjct: 451 MTSVGFGNVAAETD-NEKVFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTEKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFMMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ----DDEVVAILGKGDVFGDQ 637
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH2_RAT (Potassium voltage-gated channel subfamily H member 2 OS=Rattus norvegicus GN=Kcnh2 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12 Identity = 49/193 (25.39%), Postives = 87/193 (45.08%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599 +T FGN+ T E +F+I V+ G L+ + GN+ + S +M + ++R Q+P RQR+ Y + W+ G+D ++ PE L+ DI HL L++ F+ L + + K+ G+ + GD + + F+ RG S +IL ++ +LG + G+ L Sbjct: 624 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRG---SIEILRGDV-VVAILGKNDIFGEPL 811
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH2_RABIT (Potassium voltage-gated channel subfamily H member 2 OS=Oryctolagus cuniculus GN=KCNH2 PE=2 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12 Identity = 49/193 (25.39%), Postives = 87/193 (45.08%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599 +T FGN+ T E +F+I V+ G L+ + GN+ + S +M + ++R Q+P RQR+ Y + W+ G+D ++ PE L+ DI HL L++ F+ L + + K+ G+ + GD + + F+ RG S +IL ++ +LG + G+ L Sbjct: 624 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKDCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRG---SIEILRGDV-VVAILGKNDIFGEPL 811
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH2_MOUSE (Potassium voltage-gated channel subfamily H member 2 OS=Mus musculus GN=Kcnh2 PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12 Identity = 49/193 (25.39%), Postives = 87/193 (45.08%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599 +T FGN+ T E +F+I V+ G L+ + GN+ + S +M + ++R Q+P RQR+ Y + W+ G+D ++ PE L+ DI HL L++ F+ L + + K+ G+ + GD + + F+ RG S +IL ++ +LG + G+ L Sbjct: 624 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRG---SIEILRGDV-VVAILGKNDIFGEPL 811
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH2_HUMAN (Potassium voltage-gated channel subfamily H member 2 OS=Homo sapiens GN=KCNH2 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12 Identity = 49/193 (25.39%), Postives = 87/193 (45.08%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599 +T FGN+ T E +F+I V+ G L+ + GN+ + S +M + ++R Q+P RQR+ Y + W+ G+D ++ PE L+ DI HL L++ F+ L + + K+ G+ + GD + + F+ RG S +IL ++ +LG + G+ L Sbjct: 622 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRG---SIEILRGDV-VVAILGKNDIFGEPL 809
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH2_CANFA (Potassium voltage-gated channel subfamily H member 2 OS=Canis familiaris GN=KCNH2 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12 Identity = 49/193 (25.39%), Postives = 87/193 (45.08%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599 +T FGN+ T E +F+I V+ G L+ + GN+ + S +M + ++R Q+P RQR+ Y + W+ G+D ++ PE L+ DI HL L++ F+ L + + K+ G+ + GD + + F+ RG S +IL ++ +LG + G+ L Sbjct: 621 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRG---SIEILRGDV-VVAILGKNDIFGEPL 808
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN3_RAT (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 OS=Rattus norvegicus GN=Hcn3 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12 Identity = 42/153 (27.45%), Postives = 74/153 (48.37%), Query Frame = 3 Query: 63 WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHL 521 WL ++ I+ G M IG+ + + S ++ Q K + +E +M +LP RQR+ Y R+ + DE ++ L E LR +I C LV +PLF H D + + +++ +F G+++ +EG ++M F+ G L Sbjct: 325 WLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADTRQRIHEYYEHRYQG-KMFDEESILGELSEPLREEIINFTCRGLVAHMPLFAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLL 472
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN3_MOUSE (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 OS=Mus musculus GN=Hcn3 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12 Identity = 42/153 (27.45%), Postives = 74/153 (48.37%), Query Frame = 3 Query: 63 WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHL 521 WL ++ I+ G M IG+ + + S ++ Q K + +E +M +LP RQR+ Y R+ + DE ++ L E LR +I C LV +PLF H D + + +++ +F G+++ +EG ++M F+ G L Sbjct: 325 WLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADTRQRIHEYYEHRYQG-KMFDEESILGELSEPLREEIINFTCRGLVAHMPLFAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLL 472
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN3_HUMAN (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 OS=Homo sapiens GN=HCN3 PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12 Identity = 42/153 (27.45%), Postives = 74/153 (48.37%), Query Frame = 3 Query: 63 WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHL 521 WL ++ I+ G M IG+ + + S ++ Q K + +E +M +LP RQR+ Y R+ + DE ++ L E LR +I C LV +PLF H D + + +++ +F G+++ +EG ++M F+ G L Sbjct: 326 WLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADTRQRIHEYYEHRYQG-KMFDEESILGELSEPLREEIINFTCRGLVAHMPLFAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLL 473
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH7_MOUSE (Potassium voltage-gated channel subfamily H member 7 OS=Mus musculus GN=Kcnh7 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12 Identity = 49/191 (25.65%), Postives = 89/191 (46.60%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 +T FGN+ T E +F+I V+ G L+ + GN+ + S ++M ++ ++R Q+P RQR+ Y + W G+D ++ PE L+ DI HL L++ F+ + L + + K+ G+ + GD + + F+ RG S +IL ++I +LG + G+ Sbjct: 625 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHMQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNMVLKGFPECLQADICLHLNQTLLQNCKAFRGANKGCLRALAMKFKTTHAPPGDTLVHCGDVLTALYFLSRG---SIEILKDDI-VVAILGKNDIFGE 810 The following BLAST results are available for this feature:
BLAST of CF417831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417831 ID=CF417831; Name=CF417831; organism=Citrus sinensis; type=EST; length=667bpback to top |