CF417831

Overview
NameCF417831
Unique NameCF417831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNAE_DROME (Potassium voltage-gated channel protein eag OS=Drosophila melanogaster GN=eag PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 46/192 (23.96%), Postives = 90/192 (46.88%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDE 596
            MT   FGN+ + T+  E VF I ++    LL   + G++   +   TS        + N+  +M+  ++P+   +RV +Y    WA  +G+D  ++++  P+ ++ DI  HL   +  + P F+   D  L  +           G+++   G+ +  + F+V G L+  Q    + +   +LG G+  GD+
Sbjct:  451 MTSVGFGNVAAETD-NEKVFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTEKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFMMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ----DDEVVAILGKGDVFGDQ 637          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH2_RAT (Potassium voltage-gated channel subfamily H member 2 OS=Rattus norvegicus GN=Kcnh2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 49/193 (25.39%), Postives = 87/193 (45.08%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599
            +T   FGN+   T   E +F+I V+  G L+   + GN+   +    S       +M  +  ++R  Q+P   RQR+  Y +  W+   G+D   ++   PE L+ DI  HL   L++    F+      L  +  + K+     G+ +   GD +  + F+ RG   S +IL  ++    +LG  +  G+ L
Sbjct:  624 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRG---SIEILRGDV-VVAILGKNDIFGEPL 811          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH2_RABIT (Potassium voltage-gated channel subfamily H member 2 OS=Oryctolagus cuniculus GN=KCNH2 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 49/193 (25.39%), Postives = 87/193 (45.08%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599
            +T   FGN+   T   E +F+I V+  G L+   + GN+   +    S       +M  +  ++R  Q+P   RQR+  Y +  W+   G+D   ++   PE L+ DI  HL   L++    F+      L  +  + K+     G+ +   GD +  + F+ RG   S +IL  ++    +LG  +  G+ L
Sbjct:  624 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKDCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRG---SIEILRGDV-VVAILGKNDIFGEPL 811          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH2_MOUSE (Potassium voltage-gated channel subfamily H member 2 OS=Mus musculus GN=Kcnh2 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 49/193 (25.39%), Postives = 87/193 (45.08%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599
            +T   FGN+   T   E +F+I V+  G L+   + GN+   +    S       +M  +  ++R  Q+P   RQR+  Y +  W+   G+D   ++   PE L+ DI  HL   L++    F+      L  +  + K+     G+ +   GD +  + F+ RG   S +IL  ++    +LG  +  G+ L
Sbjct:  624 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRG---SIEILRGDV-VVAILGKNDIFGEPL 811          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH2_HUMAN (Potassium voltage-gated channel subfamily H member 2 OS=Homo sapiens GN=KCNH2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 49/193 (25.39%), Postives = 87/193 (45.08%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599
            +T   FGN+   T   E +F+I V+  G L+   + GN+   +    S       +M  +  ++R  Q+P   RQR+  Y +  W+   G+D   ++   PE L+ DI  HL   L++    F+      L  +  + K+     G+ +   GD +  + F+ RG   S +IL  ++    +LG  +  G+ L
Sbjct:  622 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRG---SIEILRGDV-VVAILGKNDIFGEPL 809          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH2_CANFA (Potassium voltage-gated channel subfamily H member 2 OS=Canis familiaris GN=KCNH2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 49/193 (25.39%), Postives = 87/193 (45.08%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599
            +T   FGN+   T   E +F+I V+  G L+   + GN+   +    S       +M  +  ++R  Q+P   RQR+  Y +  W+   G+D   ++   PE L+ DI  HL   L++    F+      L  +  + K+     G+ +   GD +  + F+ RG   S +IL  ++    +LG  +  G+ L
Sbjct:  621 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRG---SIEILRGDV-VVAILGKNDIFGEPL 808          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN3_RAT (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 OS=Rattus norvegicus GN=Hcn3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 42/153 (27.45%), Postives = 74/153 (48.37%), Query Frame = 3
Query:   63 WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHL 521
            WL ++  I+    G     M IG+    + +  S ++  Q K + +E +M   +LP   RQR+  Y   R+   +  DE  ++  L E LR +I    C  LV  +PLF H D   +  +  +++  +F  G+++ +EG   ++M F+  G L
Sbjct:  325 WLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADTRQRIHEYYEHRYQG-KMFDEESILGELSEPLREEIINFTCRGLVAHMPLFAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLL 472          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN3_MOUSE (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 OS=Mus musculus GN=Hcn3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 42/153 (27.45%), Postives = 74/153 (48.37%), Query Frame = 3
Query:   63 WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHL 521
            WL ++  I+    G     M IG+    + +  S ++  Q K + +E +M   +LP   RQR+  Y   R+   +  DE  ++  L E LR +I    C  LV  +PLF H D   +  +  +++  +F  G+++ +EG   ++M F+  G L
Sbjct:  325 WLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADTRQRIHEYYEHRYQG-KMFDEESILGELSEPLREEIINFTCRGLVAHMPLFAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLL 472          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN3_HUMAN (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 OS=Homo sapiens GN=HCN3 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 42/153 (27.45%), Postives = 74/153 (48.37%), Query Frame = 3
Query:   63 WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHL 521
            WL ++  I+    G     M IG+    + +  S ++  Q K + +E +M   +LP   RQR+  Y   R+   +  DE  ++  L E LR +I    C  LV  +PLF H D   +  +  +++  +F  G+++ +EG   ++M F+  G L
Sbjct:  326 WLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADTRQRIHEYYEHRYQG-KMFDEESILGELSEPLREEIINFTCRGLVAHMPLFAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLL 473          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH7_MOUSE (Potassium voltage-gated channel subfamily H member 7 OS=Mus musculus GN=Kcnh7 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 49/191 (25.65%), Postives = 89/191 (46.60%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            +T   FGN+   T   E +F+I V+  G L+   + GN+   +    S      ++M  ++ ++R  Q+P   RQR+  Y +  W    G+D   ++   PE L+ DI  HL   L++    F+  +   L  +  + K+     G+ +   GD +  + F+ RG   S +IL ++I    +LG  +  G+
Sbjct:  625 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHMQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNMVLKGFPECLQADICLHLNQTLLQNCKAFRGANKGCLRALAMKFKTTHAPPGDTLVHCGDVLTALYFLSRG---SIEILKDDI-VVAILGKNDIFGE 810          
The following BLAST results are available for this feature:
BLAST of CF417831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
KCNAE_DROME1.809e-1223.96Potassium voltage-gated channel protein eag OS=Dro... [more]
KCNH2_RAT2.363e-1225.39Potassium voltage-gated channel subfamily H member... [more]
KCNH2_RABIT2.363e-1225.39Potassium voltage-gated channel subfamily H member... [more]
KCNH2_MOUSE2.363e-1225.39Potassium voltage-gated channel subfamily H member... [more]
KCNH2_HUMAN2.363e-1225.39Potassium voltage-gated channel subfamily H member... [more]
KCNH2_CANFA2.363e-1225.39Potassium voltage-gated channel subfamily H member... [more]
HCN3_RAT2.363e-1227.45Potassium/sodium hyperpolarization-activated cycli... [more]
HCN3_MOUSE2.363e-1227.45Potassium/sodium hyperpolarization-activated cycli... [more]
HCN3_HUMAN2.363e-1227.45Potassium/sodium hyperpolarization-activated cycli... [more]
KCNH7_MOUSE3.086e-1225.65Potassium voltage-gated channel subfamily H member... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-761 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417831 ID=CF417831; Name=CF417831; organism=Citrus sinensis; type=EST; length=667bp
TTCCCATCTTTTGGGGCTTGATGACTCTCAGCACTTTTGGGAATCTGGAG
AGCACAACAGAATGGCTAGAAGTAGTTTTCAACATCATCGTTTTAACAAG
TGGGCTCCTTCTAGTCACCATGTTGATTGGAAATATAAAGGTGTTCTTGC
ATGCAACAACATCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATA
GAATGGTGGATGAGGAAAAGGCAATTGCCTCAAGGGTTCAGGCAGCGGGT
TCGCAACTACGAGCGGCAGCGATGGGCGGCAATGCGCGGTGTTGATGAGT
GTGAGATGATCAGTAACCTCCCTGAGGGCTTAAGAAGGGACATCAAGTAT
CATCTCTGCTTGGACTTAGTAAGACAGGTACCATTGTTCCAACATATGGA
TGATTTGGTTTTGGAGAATATTTGTGATCGAGTGAAGTCTCTCATATTTA
CAAAGGGTGAAGTGATAACAAAAGAGGGTGACCCAGTACAAAGAATGCTA
TTTGTAGTAAGAGGGCATCTTCAAAGCAGCCAAATTCTCCACAACAACAT
CAAAAGTTGCTGCATGTTGGGCCCTGGAAACTTCAGTGGCGATGAGCTTC
TATCCTGGTGCCTTCGGAGACCTTCATCGAAAGGCTACCGCCATCTTCAT
CTACTTTAATAACCCTG
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