CF417831

Overview
NameCF417831
Unique NameCF417831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH7_RAT (Potassium voltage-gated channel subfamily H member 7 OS=Rattus norvegicus GN=Kcnh7 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 49/191 (25.65%), Postives = 88/191 (46.07%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            +T   FGN+   T   E +F+I V+  G L+   + GN+   +    S      ++M  ++ ++R  Q+P   RQR+  Y +  W    G+D   ++   PE L+ DI  HL   L++    F+      L  +  + K+     G+ +   GD +  + F+ RG   S +IL ++I    +LG  +  G+
Sbjct:  625 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHMQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNMVLKGFPECLQADICLHLNQTLLQNCKAFRGASKGCLRALAMKFKTTHAPPGDTLVHCGDVLTALYFLSRG---SIEILKDDI-VVAILGKNDIFGE 810          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH7_HUMAN (Potassium voltage-gated channel subfamily H member 7 OS=Homo sapiens GN=KCNH7 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 49/191 (25.65%), Postives = 88/191 (46.07%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593
            +T   FGN+   T   E +F+I V+  G L+   + GN+   +    S      ++M  ++ ++R  Q+P   RQR+  Y +  W    G+D   ++   PE L+ DI  HL   L++    F+      L  +  + K+     G+ +   GD +  + F+ RG   S +IL ++I    +LG  +  G+
Sbjct:  625 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHMQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNMVLKGFPECLQADICLHLNQTLLQNCKAFRGASKGCLRALAMKFKTTHAPPGDTLVHCGDVLTALYFLSRG---SIEILKDDI-VVAILGKNDIFGE 810          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH2_CHICK (Potassium voltage-gated channel subfamily H member 2 (Fragment) OS=Gallus gallus GN=KCNH2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 48/193 (24.87%), Postives = 88/193 (45.60%), Query Frame = 3
Query:   21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599
            +T   FGN+   T   E +F+I V+  G L+   + GN+   +    S       +M  ++ ++R  Q+P   RQR+  Y +  W+   G+D   ++   P+ L+ DI  HL   L++    F+      L  +  + K+     G+ +   GD +  + F+ RG   S +IL  +I    +LG  +  G+ +
Sbjct:  326 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPDCLQADICLHLNRTLLQNCKAFRGASKGCLRALAMKFKTTHAPPGDTLVHYGDVLTTLYFISRG---SIEILKEDI-VVAILGKNDIFGEPI 513          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN2_RAT (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Rattus norvegicus GN=Hcn2 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 44/157 (28.03%), Postives = 77/157 (49.04%), Query Frame = 3
Query:   48 ESTTE-WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRG 515
            ES T+ WL ++  I+    G     M IG+    + +  S ++  Q K + +E +M   +LP  FRQ++ +Y   R+   +  DE  ++  L   LR +I    C  LV  +PLF + D   +  +  ++K  +F  G+ I +EG   ++M F+  G
Sbjct:  409 ESMTDIWLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 560          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN2_MOUSE (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Mus musculus GN=Hcn2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 44/157 (28.03%), Postives = 77/157 (49.04%), Query Frame = 3
Query:   48 ESTTE-WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRG 515
            ES T+ WL ++  I+    G     M IG+    + +  S ++  Q K + +E +M   +LP  FRQ++ +Y   R+   +  DE  ++  L   LR +I    C  LV  +PLF + D   +  +  ++K  +F  G+ I +EG   ++M F+  G
Sbjct:  409 ESMTDIWLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 560          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN2_HUMAN (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Homo sapiens GN=HCN2 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 44/157 (28.03%), Postives = 77/157 (49.04%), Query Frame = 3
Query:   48 ESTTE-WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRG 515
            ES T+ WL ++  I+    G     M IG+    + +  S ++  Q K + +E +M   +LP  FRQ++ +Y   R+   +  DE  ++  L   LR +I    C  LV  +PLF + D   +  +  ++K  +F  G+ I +EG   ++M F+  G
Sbjct:  436 ESMTDIWLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 587          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: GORK_ARATH (Potassium channel GORK OS=Arabidopsis thaliana GN=GORK PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 49/198 (24.75%), Postives = 100/198 (50.51%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLE-STTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQI-LHNNIKSCCMLGPGNFSGD 593
            +++ ++T++T G  +       E++F +I ++  ++L   LIGNI   +    S  +  + KM ++  +M +++L +  R ++  + R ++ +     +  M+ ++P  +R  I   L L  +++VPLF+      +  I  R+    F  GEVIT++G+ V  + FV  G L++       + +S  +LGP    GD
Sbjct:  262 LYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMVLGAYLIGNITALI-VKGSNTERFRDKMNDLISFMNRKKLGRDLRSQITGHVRLQYDSH--YTDTVMLQDIPASIRAKIAQLLYLPYIKKVPLFKGCSTEFINQIVIRLHEEYFLPGEVITEQGNVVDHLYFVCEGLLEALVTKTDGSEESVTLLGPHTSFGD 456          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN4_RAT (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 OS=Rattus norvegicus GN=Hcn4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 41/151 (27.15%), Postives = 74/151 (49.01%), Query Frame = 3
Query:   63 WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRG 515
            WL ++  I+    G     M IG+    + +  S ++  Q K + +E +M   +LP   RQR+ +Y   R+   +  DE  ++  L E LR +I    C  LV  +PLF + D   + ++  +++  +F  G+ I +EG   ++M F+  G
Sbjct:  493 WLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG 638          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN4_RABIT (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 OS=Oryctolagus cuniculus GN=HCN4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 41/151 (27.15%), Postives = 74/151 (49.01%), Query Frame = 3
Query:   63 WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRG 515
            WL ++  I+    G     M IG+    + +  S ++  Q K + +E +M   +LP   RQR+ +Y   R+   +  DE  ++  L E LR +I    C  LV  +PLF + D   + ++  +++  +F  G+ I +EG   ++M F+  G
Sbjct:  494 WLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG 639          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN4_MOUSE (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 OS=Mus musculus GN=Hcn4 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 41/151 (27.15%), Postives = 74/151 (49.01%), Query Frame = 3
Query:   63 WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRG 515
            WL ++  I+    G     M IG+    + +  S ++  Q K + +E +M   +LP   RQR+ +Y   R+   +  DE  ++  L E LR +I    C  LV  +PLF + D   + ++  +++  +F  G+ I +EG   ++M F+  G
Sbjct:  493 WLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG 638          
The following BLAST results are available for this feature:
BLAST of CF417831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
KCNH7_RAT4.031e-1225.65Potassium voltage-gated channel subfamily H member... [more]
KCNH7_HUMAN4.031e-1225.65Potassium voltage-gated channel subfamily H member... [more]
KCNH2_CHICK4.031e-1224.87Potassium voltage-gated channel subfamily H member... [more]
HCN2_RAT4.457e-1128.03Potassium/sodium hyperpolarization-activated cycli... [more]
HCN2_MOUSE4.457e-1128.03Potassium/sodium hyperpolarization-activated cycli... [more]
HCN2_HUMAN4.457e-1128.03Potassium/sodium hyperpolarization-activated cycli... [more]
GORK_ARATH5.820e-1124.75Potassium channel GORK OS=Arabidopsis thaliana GN=... [more]
HCN4_RAT7.602e-1127.15Potassium/sodium hyperpolarization-activated cycli... [more]
HCN4_RABIT7.602e-1127.15Potassium/sodium hyperpolarization-activated cycli... [more]
HCN4_MOUSE7.602e-1127.15Potassium/sodium hyperpolarization-activated cycli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-761 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417831 ID=CF417831; Name=CF417831; organism=Citrus sinensis; type=EST; length=667bp
TTCCCATCTTTTGGGGCTTGATGACTCTCAGCACTTTTGGGAATCTGGAG
AGCACAACAGAATGGCTAGAAGTAGTTTTCAACATCATCGTTTTAACAAG
TGGGCTCCTTCTAGTCACCATGTTGATTGGAAATATAAAGGTGTTCTTGC
ATGCAACAACATCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATA
GAATGGTGGATGAGGAAAAGGCAATTGCCTCAAGGGTTCAGGCAGCGGGT
TCGCAACTACGAGCGGCAGCGATGGGCGGCAATGCGCGGTGTTGATGAGT
GTGAGATGATCAGTAACCTCCCTGAGGGCTTAAGAAGGGACATCAAGTAT
CATCTCTGCTTGGACTTAGTAAGACAGGTACCATTGTTCCAACATATGGA
TGATTTGGTTTTGGAGAATATTTGTGATCGAGTGAAGTCTCTCATATTTA
CAAAGGGTGAAGTGATAACAAAAGAGGGTGACCCAGTACAAAGAATGCTA
TTTGTAGTAAGAGGGCATCTTCAAAGCAGCCAAATTCTCCACAACAACAT
CAAAAGTTGCTGCATGTTGGGCCCTGGAAACTTCAGTGGCGATGAGCTTC
TATCCTGGTGCCTTCGGAGACCTTCATCGAAAGGCTACCGCCATCTTCAT
CTACTTTAATAACCCTG
back to top