CF417831
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH7_RAT (Potassium voltage-gated channel subfamily H member 7 OS=Rattus norvegicus GN=Kcnh7 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12 Identity = 49/191 (25.65%), Postives = 88/191 (46.07%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 +T FGN+ T E +F+I V+ G L+ + GN+ + S ++M ++ ++R Q+P RQR+ Y + W G+D ++ PE L+ DI HL L++ F+ L + + K+ G+ + GD + + F+ RG S +IL ++I +LG + G+ Sbjct: 625 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHMQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNMVLKGFPECLQADICLHLNQTLLQNCKAFRGASKGCLRALAMKFKTTHAPPGDTLVHCGDVLTALYFLSRG---SIEILKDDI-VVAILGKNDIFGE 810
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH7_HUMAN (Potassium voltage-gated channel subfamily H member 7 OS=Homo sapiens GN=KCNH7 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12 Identity = 49/191 (25.65%), Postives = 88/191 (46.07%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 593 +T FGN+ T E +F+I V+ G L+ + GN+ + S ++M ++ ++R Q+P RQR+ Y + W G+D ++ PE L+ DI HL L++ F+ L + + K+ G+ + GD + + F+ RG S +IL ++I +LG + G+ Sbjct: 625 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHMQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNMVLKGFPECLQADICLHLNQTLLQNCKAFRGASKGCLRALAMKFKTTHAPPGDTLVHCGDVLTALYFLSRG---SIEILKDDI-VVAILGKNDIFGE 810
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: KCNH2_CHICK (Potassium voltage-gated channel subfamily H member 2 (Fragment) OS=Gallus gallus GN=KCNH2 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12 Identity = 48/193 (24.87%), Postives = 88/193 (45.60%), Query Frame = 3 Query: 21 MTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 599 +T FGN+ T E +F+I V+ G L+ + GN+ + S +M ++ ++R Q+P RQR+ Y + W+ G+D ++ P+ L+ DI HL L++ F+ L + + K+ G+ + GD + + F+ RG S +IL +I +LG + G+ + Sbjct: 326 LTSVGFGNVSPNTN-SEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPDCLQADICLHLNRTLLQNCKAFRGASKGCLRALAMKFKTTHAPPGDTLVHYGDVLTTLYFISRG---SIEILKEDI-VVAILGKNDIFGEPI 513
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN2_RAT (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Rattus norvegicus GN=Hcn2 PE=2 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11 Identity = 44/157 (28.03%), Postives = 77/157 (49.04%), Query Frame = 3 Query: 48 ESTTE-WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRG 515 ES T+ WL ++ I+ G M IG+ + + S ++ Q K + +E +M +LP FRQ++ +Y R+ + DE ++ L LR +I C LV +PLF + D + + ++K +F G+ I +EG ++M F+ G Sbjct: 409 ESMTDIWLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 560
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN2_MOUSE (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Mus musculus GN=Hcn2 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11 Identity = 44/157 (28.03%), Postives = 77/157 (49.04%), Query Frame = 3 Query: 48 ESTTE-WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRG 515 ES T+ WL ++ I+ G M IG+ + + S ++ Q K + +E +M +LP FRQ++ +Y R+ + DE ++ L LR +I C LV +PLF + D + + ++K +F G+ I +EG ++M F+ G Sbjct: 409 ESMTDIWLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 560
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN2_HUMAN (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Homo sapiens GN=HCN2 PE=1 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11 Identity = 44/157 (28.03%), Postives = 77/157 (49.04%), Query Frame = 3 Query: 48 ESTTE-WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRG 515 ES T+ WL ++ I+ G M IG+ + + S ++ Q K + +E +M +LP FRQ++ +Y R+ + DE ++ L LR +I C LV +PLF + D + + ++K +F G+ I +EG ++M F+ G Sbjct: 436 ESMTDIWLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 587
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: GORK_ARATH (Potassium channel GORK OS=Arabidopsis thaliana GN=GORK PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11 Identity = 49/198 (24.75%), Postives = 100/198 (50.51%), Query Frame = 3 Query: 6 IFWGLMTLSTFGNLE-STTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQI-LHNNIKSCCMLGPGNFSGD 593 +++ ++T++T G + E++F +I ++ ++L LIGNI + S + + KM ++ +M +++L + R ++ + R ++ + + M+ ++P +R I L L +++VPLF+ + I R+ F GEVIT++G+ V + FV G L++ + +S +LGP GD Sbjct: 262 LYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMVLGAYLIGNITALI-VKGSNTERFRDKMNDLISFMNRKKLGRDLRSQITGHVRLQYDSH--YTDTVMLQDIPASIRAKIAQLLYLPYIKKVPLFKGCSTEFINQIVIRLHEEYFLPGEVITEQGNVVDHLYFVCEGLLEALVTKTDGSEESVTLLGPHTSFGD 456
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN4_RAT (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 OS=Rattus norvegicus GN=Hcn4 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11 Identity = 41/151 (27.15%), Postives = 74/151 (49.01%), Query Frame = 3 Query: 63 WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRG 515 WL ++ I+ G M IG+ + + S ++ Q K + +E +M +LP RQR+ +Y R+ + DE ++ L E LR +I C LV +PLF + D + ++ +++ +F G+ I +EG ++M F+ G Sbjct: 493 WLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG 638
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN4_RABIT (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 OS=Oryctolagus cuniculus GN=HCN4 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11 Identity = 41/151 (27.15%), Postives = 74/151 (49.01%), Query Frame = 3 Query: 63 WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRG 515 WL ++ I+ G M IG+ + + S ++ Q K + +E +M +LP RQR+ +Y R+ + DE ++ L E LR +I C LV +PLF + D + ++ +++ +F G+ I +EG ++M F+ G Sbjct: 494 WLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG 639
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: HCN4_MOUSE (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 OS=Mus musculus GN=Hcn4 PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11 Identity = 41/151 (27.15%), Postives = 74/151 (49.01%), Query Frame = 3 Query: 63 WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRG 515 WL ++ I+ G M IG+ + + S ++ Q K + +E +M +LP RQR+ +Y R+ + DE ++ L E LR +I C LV +PLF + D + ++ +++ +F G+ I +EG ++M F+ G Sbjct: 493 WLTMLSMIV----GATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG 638 The following BLAST results are available for this feature:
BLAST of CF417831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417831 ID=CF417831; Name=CF417831; organism=Citrus sinensis; type=EST; length=667bpback to top |