CF417832

Overview
NameCF417832
Unique NameCF417832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7003 contig Csv1_Contig7003:144..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_OLILU (Histone H4 OS=Olisthodiscus luteus PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 7.706e-37
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_SOLLC (Histone H4 OS=Solanum lycopersicum PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.314e-36
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_SOLCH (Histone H4 OS=Solanum chacoense PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.314e-36
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_CAPAN (Histone H4 OS=Capsicum annuum PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.314e-36
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_XENTR (Histone H4 OS=Xenopus tropicalis GN=TGas006m08.1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_XENLA (Histone H4 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_XENBO (Histone H4 OS=Xenopus borealis PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_URECA (Histone H4 OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_TIGCA (Histone H4 OS=Tigriopus californicus GN=His4 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_RHYAM (Histone H4 OS=Rhynchosciara americana GN=His4 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of CF417832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_OLILU7.706e-3797.44Histone H4 OS=Olisthodiscus luteus PE=1 SV=2[more]
H4_SOLLC1.314e-3697.44Histone H4 OS=Solanum lycopersicum PE=3 SV=2[more]
H4_SOLCH1.314e-3697.44Histone H4 OS=Solanum chacoense PE=3 SV=3[more]
H4_CAPAN1.314e-3697.44Histone H4 OS=Capsicum annuum PE=3 SV=3[more]
H4_XENTR1.717e-3696.15Histone H4 OS=Xenopus tropicalis GN=TGas006m08.1 P... [more]
H4_XENLA1.717e-3696.15Histone H4 OS=Xenopus laevis PE=1 SV=2[more]
H4_XENBO1.717e-3696.15Histone H4 OS=Xenopus borealis PE=3 SV=2[more]
H4_URECA1.717e-3696.15Histone H4 OS=Urechis caupo PE=3 SV=2[more]
H4_TIGCA1.717e-3696.15Histone H4 OS=Tigriopus californicus GN=His4 PE=3 ... [more]
H4_RHYAM1.717e-3696.15Histone H4 OS=Rhynchosciara americana GN=His4 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-762 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417832 ID=CF417832; Name=CF417832; organism=Citrus sinensis; type=EST; length=455bp
TAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCNTAGGG
GTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACACGTGGCGTT
CTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGA
GCACGCTCGGAGGAAGACGGTGACGGCGATGGACGTCGTGTACGCGCTCA
AGAGGCAGGGCAGGACTCTCTACGGGTTTGGTGGTTAAAGAAGTTGGTAT
CGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTT
TTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTTAA
ATGGGAATCTTGGTTTAATTTGTTAATGGTGTTTGCATTTTGTAAGGTTA
ATGACCTATGATTTTGAGTAGAATTAACGATAGATGGTTGTGGAGCTTCT
TGGTA
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