CF417832

Overview
NameCF417832
Unique NameCF417832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7003 contig Csv1_Contig7003:144..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H42_ASHGO (Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 2.172e-31
Identity = 67/78 (85.90%), Postives = 72/78 (92.31%), Query Frame = 2
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAI RLA RGGVKRISGLIYE+ R VLK  LE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAILRLARRGGVKRISGLIYEDVRAVLKSVLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103          
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_EUPCR (Histone H4 OS=Euplotes crassus PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 6.319e-31
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 2
Query:    5 IQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            I G+TKPAIRRLA RGGVKRIS L+YEETR VLK FLE+VIRD+VTYTEHA+RKTVTA+DVVYALKRQG+TLYGFGG
Sbjct:   31 ILGVTKPAIRRLARRGGVKRISSLVYEETRAVLKGFLESVIRDSVTYTEHAKRKTVTALDVVYALKRQGKTLYGFGG 107          
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_ENTHI (Histone H4 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.467e-29
Identity = 61/75 (81.33%), Postives = 70/75 (93.33%), Query Frame = 2
Query:    5 IQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 229
            ++GITKPAIRRLA RGGVKRI+G +Y+ETR VLK FLE VIRD+VTYTEHA+R+TVTAMDVVYALKRQGRTLYG+
Sbjct:   43 LKGITKPAIRRLARRGGVKRINGAVYDETRNVLKQFLEQVIRDSVTYTEHAKRRTVTAMDVVYALKRQGRTLYGY 117          
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H41_BLEJA (Histone H4-1 (Fragment) OS=Blepharisma japonicum PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 2.247e-28
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 2
Query:    2 NIQGITKPAIRRLAXRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 211
            NIQGITKPAIRRLA RGGVKR +SGL+Y+ETR VLK+FLENV+RDAVTYTEHARRKTVTA+DVVYALKRQG
Sbjct:   28 NIQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLENVVRDAVTYTEHARRKTVTALDVVYALKRQG 98          
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_DICDI (Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.833e-28
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 2
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 229
            +I GITKPAIRRLA RGGVKRIS  IYEETR VL+ FL NVIRD+V YTEHA R+TVTAMDVVYALKRQGRTLYGF
Sbjct:   31 HINGITKPAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALKRQGRTLYGF 106          
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H42_BLEJA (Histone H4 (Fragment) OS=Blepharisma japonicum GN=H4 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.588e-26
Identity = 58/71 (81.69%), Postives = 67/71 (94.37%), Query Frame = 2
Query:    2 NIQGITKPAIRRLAXRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 211
            N QGITKPAIRRLA RGGVKR +SGL+Y+ETR VLK+FLE+V+RDAVTYTEHA+R+TVTA+DVVYALKRQG
Sbjct:   19 NNQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLESVVRDAVTYTEHAKRETVTALDVVYALKRQG 89          
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4G_HUMAN (Histone H4-like protein type G OS=Homo sapiens GN=HIST1H4G PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.358e-24
Identity = 59/73 (80.82%), Postives = 61/73 (83.56%), Query Frame = 2
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 220
            NIQGITK  IRRLA  GGVKRI GLIYEETR V K+FLENVI  AVT TEHA+RKTVTAM VVY LKRQGRTL
Sbjct:   26 NIQGITKCTIRRLARHGGVKRILGLIYEETRRVFKVFLENVIWYAVTNTEHAKRKTVTAMAVVYVLKRQGRTL 98          
The following BLAST results are available for this feature:
BLAST of CF417832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H42_ASHGO2.172e-3185.90Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3[more]
H4_EUPCR6.319e-3184.42Histone H4 OS=Euplotes crassus PE=1 SV=3[more]
H4_ENTHI3.467e-2981.33Histone H4 OS=Entamoeba histolytica PE=3 SV=1[more]
H41_BLEJA2.247e-2887.32Histone H4-1 (Fragment) OS=Blepharisma japonicum P... [more]
H4_DICDI3.833e-2882.89Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1... [more]
H42_BLEJA3.588e-2681.69Histone H4 (Fragment) OS=Blepharisma japonicum GN=... [more]
H4G_HUMAN3.358e-2480.82Histone H4-like protein type G OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-762 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417832 ID=CF417832; Name=CF417832; organism=Citrus sinensis; type=EST; length=455bp
TAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCNTAGGG
GTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACACGTGGCGTT
CTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGA
GCACGCTCGGAGGAAGACGGTGACGGCGATGGACGTCGTGTACGCGCTCA
AGAGGCAGGGCAGGACTCTCTACGGGTTTGGTGGTTAAAGAAGTTGGTAT
CGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTT
TTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTTAA
ATGGGAATCTTGGTTTAATTTGTTAATGGTGTTTGCATTTTGTAAGGTTA
ATGACCTATGATTTTGAGTAGAATTAACGATAGATGGTTGTGGAGCTTCT
TGGTA
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