CF417832

Overview
NameCF417832
Unique NameCF417832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_RAT (Histone H4 OS=Rattus norvegicus GN=Hist1h4b PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_PONAB (Histone H4 OS=Pongo abelii PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_PLADU (Histone H4 OS=Platynereis dumerilii PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_PIG (Histone H4 OS=Sus scrofa PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_ORENI (Histone H4 OS=Oreochromis niloticus PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_ONCMY (Histone H4 OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_MYTTR (Histone H4 OS=Mytilus trossulus PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_MYTGA (Histone H4 OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_MYTED (Histone H4 OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_MYTCH (Histone H4 OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of CF417832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_RAT1.717e-3696.15Histone H4 OS=Rattus norvegicus GN=Hist1h4b PE=1 S... [more]
H4_PONAB1.717e-3696.15Histone H4 OS=Pongo abelii PE=3 SV=1[more]
H4_PLADU1.717e-3696.15Histone H4 OS=Platynereis dumerilii PE=1 SV=2[more]
H4_PIG1.717e-3696.15Histone H4 OS=Sus scrofa PE=1 SV=2[more]
H4_ORENI1.717e-3696.15Histone H4 OS=Oreochromis niloticus PE=3 SV=2[more]
H4_ONCMY1.717e-3696.15Histone H4 OS=Oncorhynchus mykiss PE=1 SV=2[more]
H4_MYTTR1.717e-3696.15Histone H4 OS=Mytilus trossulus PE=3 SV=3[more]
H4_MYTGA1.717e-3696.15Histone H4 OS=Mytilus galloprovincialis PE=3 SV=3[more]
H4_MYTED1.717e-3696.15Histone H4 OS=Mytilus edulis PE=3 SV=3[more]
H4_MYTCH1.717e-3696.15Histone H4 OS=Mytilus chilensis PE=3 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-762 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417832 ID=CF417832; Name=CF417832; organism=Citrus sinensis; type=EST; length=455bp
TAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCNTAGGG
GTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACACGTGGCGTT
CTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGA
GCACGCTCGGAGGAAGACGGTGACGGCGATGGACGTCGTGTACGCGCTCA
AGAGGCAGGGCAGGACTCTCTACGGGTTTGGTGGTTAAAGAAGTTGGTAT
CGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTT
TTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTTAA
ATGGGAATCTTGGTTTAATTTGTTAATGGTGTTTGCATTTTGTAAGGTTA
ATGACCTATGATTTTGAGTAGAATTAACGATAGATGGTTGTGGAGCTTCT
TGGTA
back to top